Re: [gmx-users] installation problem

2018-02-19 Thread João Henriques
This is completely vague. Please report what the actual error is and then people might be able to help. J On Mon, Feb 19, 2018 at 9:43 AM, banijamali_fs wrote: > Hi there, > > unfortunately I uninstall the gromacs program from my PC and I couldn't > install it again with so many ways that I tes

Re: [gmx-users] Installation Problem... No command 'gmx' found

2016-04-21 Thread Md. Imrul Reza Shishir
mpi (depending on > the installation) is mandatory. > > -Justin > > > >> From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se < >> gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of Email >> Gmail Pribadi >&

Re: [gmx-users] Installation Problem... No command 'gmx' found

2016-04-21 Thread Justin Lemkul
Gmail Pribadi Sent: Thursday, April 21, 2016 9:18 AM To: gmx-us...@gromacs.org Subject: Re: [gmx-users] Installation Problem... No command 'gmx' found Hi, Try gmx [command] . Ex. gmx mdrun -option Regards, Husen On 21 Apr 2016, at 12.31, terrence...@gmail.com wrote: Hi, Try gm

Re: [gmx-users] Installation Problem... No command 'gmx' found

2016-04-21 Thread Sotirios Dionysios I. Papadatos
il 21, 2016 9:18 AM To: gmx-us...@gromacs.org Subject: Re: [gmx-users] Installation Problem... No command 'gmx' found Hi, Try gmx [command] . Ex. gmx mdrun -option Regards, Husen > On 21 Apr 2016, at 12.31, terrence...@gmail.com wrote: > > Hi, > > Try gmx_mpi. > &

Re: [gmx-users] Installation Problem... No command 'gmx' found

2016-04-20 Thread Email Gmail Pribadi
Hi, Try gmx [command] . Ex. gmx mdrun -option Regards, Husen > On 21 Apr 2016, at 12.31, terrence...@gmail.com wrote: > > Hi, > > Try gmx_mpi. > > Regards > Terry > > >> On 21 Apr 2016, at 12:11 PM, Md. Imrul Reza Shishir >> wrote: >> >> Dear all user >> >> I install gromacs in my la

Re: [gmx-users] Installation Problem... No command 'gmx' found

2016-04-20 Thread terrencesun
Hi, Try gmx_mpi. Regards Terry > On 21 Apr 2016, at 12:11 PM, Md. Imrul Reza Shishir > wrote: > > Dear all user > > I install gromacs in my laptop its perfectly ok. But i have problem to > install in my desktop there i face problem. > In my desktop i want to compile with cuda accelerator a

Re: [gmx-users] Installation problem

2016-02-14 Thread Mark Abraham
Hi, As you have read in the install guide (hint, hint) CUDA and OpenCL support are mutually exclusive. Your second attempt was clearly run in the same build directory, so you have not changed your previous choice where OpenCL was on. Either turn it off, change build directory, or clear the content

Re: [gmx-users] Installation problem

2016-02-14 Thread Prof. Eddie
Thanks. I thought it would be better to have ocl as well just in case. However, I tried you suggestion: cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON ; make and it still have the same error [100%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o Li

Re: [gmx-users] Installation problem

2016-02-13 Thread Nikhil Maroli
cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests

Re: [gmx-users] Installation problem

2016-02-13 Thread Mark Abraham
Hi, If you have a CUDA-capable GPU, as the instruction guide says, you have no reason to build with OpenCL support (but perhaps we need to check that the template tool works properly with OpenCL) Mark On Sat, 13 Feb 2016 15:41 Prof. Eddie wrote: > Hi, > The system has a gpu (gtx 590) with cuda

Re: [gmx-users] Installation problem

2016-02-13 Thread Prof. Eddie
Hi, The system has a gpu (gtx 590) with cuda libraries installed (I've run namd on the system). It also has mpi: mpic++ mpiCCmpiCC.openmpimpicxx mpiexec mpif77 mpif90 mpirun mpiccmpicc.openmpimpic++.openmpi mpicxx.op

Re: [gmx-users] Installation problem

2016-02-12 Thread Nikhil Maroli
Hi, What is your system details?Do you have GPU ,if yes CUDA library is installed? if not please install CUDA library and MPI packages too! hope it will fix -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

Re: [gmx-users] Installation problem

2015-07-06 Thread Mark Abraham
Hi, The real problem description is at the end. You are doing the download with a cmake that relies on curl that relies on libssl and that doesn't support the boring standard https protocol. Perhaps your operating system is too old to be useful. You can bypass this and get the tests yourself, foll

Re: [gmx-users] Installation problem on CRAY XC40----Gromacs-5.0.4

2015-03-31 Thread Szilárd Páll
Nothing unexpected, you can't run on the login node binaries that you compiled for the compute nodes. -- Szilárd On Tue, Mar 31, 2015 at 7:48 AM, Satyabrata Das wrote: > Thank you, I will read Cray docs again, presently trying to install with > gcc 4.8 because > 4.9 is showing incompatibility er

Re: [gmx-users] Installation problem on CRAY XC40----Gromacs-5.0.4

2015-03-30 Thread Satyabrata Das
Thank you, I will read Cray docs again, presently trying to install with gcc 4.8 because 4.9 is showing incompatibility error with the available cudatoolkit. It seems CPU-only installation is successful. However both built in test case and regression-test failed with the following error: [Tue Mar

Re: [gmx-users] Installation problem on CRAY XC40----Gromacs-5.0.4

2015-03-30 Thread Szilárd Páll
Hi, You may want to read the Cray docs before attempting to compile on the machine. You need to use the compiler wrappers (cc/CC) if you want to run on the compute nodes and I suggest that you just use gcc 4.8/4.9 which will be both compatible with nvcc and faster. Cheers, -- Szilárd On Mon, Ma

Re: [gmx-users] Installation problem with Gromacs 5.0.2

2014-12-10 Thread Mark Abraham
Hi, Thanks for the report. The Box server somehow did not have the link expiry flag set for either the 5.0.2 or 5.0.1 versions, so perhaps decided it could change the underlying static URL, which broke the forwarding from gerrit.gromacs.org. That's all fixed now. Mark On Wed, Dec 10, 2014 at 10:

Re: [gmx-users] Installation problem with Gromacs 5.0.2

2014-12-10 Thread PAULAMI CHATTERJEE
Hello Bikash, Thank you for your prompt response. As you suggested  I tried to manually download the 'regressiontests-5.0.2.tar.gz' file from this link https://kth.box.com/shared/static/oymh61gk1ya9qoden2tn.gz But I found "This shared file or folder link has been removed".I am sure I am missing

Re: [gmx-users] Installation problem with Gromacs 5.0.2

2014-12-10 Thread Bikash Ranjan Sahoo
Hi, Don't use the "-DREGRESSIONTEST_DOWNLOAD=ON" flag in cmake. if u need it then download, configure, install and manually set the path in Cmake configuration. Good luck On Wed, Dec 10, 2014 at 5:10 PM, PAULAMI CHATTERJEE < chatterjee_paul...@yahoo.co.in> wrote: > Dear all > > I am trying to