Re: [PATCH] gnu: Add ruby-libxml and bioruby.

BioRuby patch updated. Pj. >From dd1fb03349d2ba2e7f36252d68f3de11f21b8866 Mon Sep 17 00:00:00 2001 Date: Thu, 17 Sep 2015 06:17:44 + Subject: [PATCH] gnu: Add ruby-libxml and bioruby. To: guix-devel@gnu.org From: Pjotr Prins * gnu/packages/bioinformatics.scm

Re: [PATCH] gnu: Add bio-blastxmlparser.

This one is in the queue. On Wed, Sep 16, 2015 at 08:53:13AM +0200, Pjotr Prins wrote: > * gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable. > --- > gnu/packages/bioinformatics.scm | 25 + > 1 file changed, 25 insertions(+) > > diff --git

Re: [PATCH] lint: Add 'check-texinfo-markup' checker.

Howdy! I realized that it would be nice if, in ‘check-description-style’, all the tests except ‘check-not-empty’ and ‘check-texinfo-markup’ would run on the rendered but non-translated description (and of course, only if the Texinfo markup is valid.) WDYT? In the same area, I think

[PATCH] Add python2-seqmagick.

Thanks in advance for review peoples. >From 298c9aabc2d042c45c8f96d83229016dc5c1cbd6 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Thu, 17 Sep 2015 21:43:12 +1000 Subject: [PATCH] gnu: Add python2-seqmagick. * gnu/packages/bioinformatics.scm (python2-seqmagick): New

Re: [PATCH 03/19] gnu: Add r-dbi.

Vicente Vera writes: > I'm sorry for the home-page and synopsis in separate lines; truly bad > choice there since every patch has the same issue. If you don't mind I > could upload corrected versions. That’s okay. I’ll amend your patches before pushing, so you don’t need

Re: [PATCH 04/19] gnu: Add r-bh.

Vicente Vera writes: > I don't know if the boost package in the distribution could be used to > comply with the requirements. IMO it is safer to incorporate r-bh as > it is needed by dplyr. I took a look at the README file and have come to the conclusion that it is best

Re: [PATCH 1/2] gnu: Add eyed3.

a little bump. this patch seems to have been forgotten, and I think this was the resolved version pgpQf9vPQKqsp.pgp Description: OpenPGP digital signature

[PATCH] download: Fix some minor progress-logging regressions.

Just some small tweaks to fix up logging. -Steve From 11440f61cebd49d31d165f6433ec6e4b1afe728f Mon Sep 17 00:00:00 2001 From: Steve Sprang Date: Thu, 17 Sep 2015 04:22:01 -0700 Subject: [PATCH] download: Fix some minor progress-logging regressions. *

Re: [PATCH] gnu: commencement: Add support for a native GNU/Hurd system.

Sorry for the delay, updated patch. Manolis From 877ff9bab11056c221b4d325561e16a46a9ff09d Mon Sep 17 00:00:00 2001 From: Manolis Ragkousis Date: Thu, 17 Sep 2015 12:24:17 +0300 Subject: [PATCH] gnu: commencement: Add support for a native GNU/Hurd system. *

Re: [PATCH] gnu: guile: Add guile-next

Christopher Allan Webber skribis: > Let me know if everything looks GOOD-ENOUGH? #t I added a ‘synopsis’ line for clarity and pushed. Thank you for inviting us to live on the edge! :-) Ludo’.

Re: [PATCH] download: Only show hours in the elapsed time if necessary.

Steve Sprang skribis: > From 5f4cafc1c0b6d261b0f19a77c64e8700784c8d9a Mon Sep 17 00:00:00 2001 > From: Steve Sprang > Date: Wed, 16 Sep 2015 20:43:58 -0700 > Subject: [PATCH] download: Only show hours in the elapsed time if necessary. > > *

New Install

Firstly apologies if this is the wrong place to ask support/general questions; please send me elsewhere if need be. I have just stumbled across guixsd and am looking forward to installing it this weekend. Before I do so, two things leap to mind. - It is feasible/straightforward to install guixsd

Re: [PATCH] Add python2-seqmagick.

Hi Ben, thank you very much for your patch! > From 298c9aabc2d042c45c8f96d83229016dc5c1cbd6 Mon Sep 17 00:00:00 2001 > From: Ben Woodcroft > Date: Thu, 17 Sep 2015 21:43:12 +1000 > Subject: [PATCH] gnu: Add python2-seqmagick. > * gnu/packages/bioinformatics.scm

Re: [PATCH] gnu: Add scmutils.

On Thu, Sep 17, 2015 at 3:03 PM, Ludovic Courtès wrote: > Federico Beffa skribis: > >> From 1aacd03326def7b52b8166a80cc18c8e8226aa62 Mon Sep 17 00:00:00 2001 >> From: Federico Beffa >> Date: Thu, 13 Aug 2015 18:58:01 +0200 >> Subject:

Re: [PATCH 5/5] gnu: Add python2-keyring.

Cyril Roelandt writes: > * gnu/packages/python.scm (python2-keyring): New variable. > --- > gnu/packages/python.scm | 3 +++ > 1 file changed, 3 insertions(+) > > diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm > index cecd750..3438f20 100644 > ---

[PATCH 2/5] gnu: Fix the definition of python2-pyflakes-0.8.1.

* gnu/packages/python.scm (python2-pyflakes-0.8.1): Fix the definition. --- gnu/packages/python.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 1818993..0f94a54 100644 --- a/gnu/packages/python.scm +++

[PATCH 4/5] gnu: Add python-mccabe-0.2.1

* gnu/packages/python.scm (python-mccabe-0.2.1, python2-mccabe-0.2.1): New variables. --- gnu/packages/python.scm | 18 ++ 1 file changed, 18 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 0117eb7..cecd750 100644 --- a/gnu/packages/python.scm

[PATCH 1/5] gnu: Add python-prettytable

* gnu/packages/python.scm (python-prettytable, python2-prettytable): New variables. --- gnu/packages/python.scm | 28 1 file changed, 28 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 408064d..1818993 100644 ---

Re: Dealing with common collisions in profiles

How do we disable the message? I get pages and pages of collisions by now. warning: arbitrarily choosing /gnu/store/z4pvymzvvk8mlsry6gf04z40ij537aj4-gcc-toolchain-5.1.0/include/linux/ipv6.h warning: collision encountered:

[PATCH 3/5] gnu: Add python2-pyflakes.

* gnu/packages/python.scm (python2-pyflakes): New variable. --- gnu/packages/python.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 0f94a54..0117eb7 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -4434,6

[PATCH 5/5] gnu: Add python2-keyring.

* gnu/packages/python.scm (python2-keyring): New variable. --- gnu/packages/python.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index cecd750..3438f20 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -783,6

Re: [PATCH] gnu: Add scmutils.

Federico Beffa skribis: > From 1aacd03326def7b52b8166a80cc18c8e8226aa62 Mon Sep 17 00:00:00 2001 > From: Federico Beffa > Date: Thu, 13 Aug 2015 18:58:01 +0200 > Subject: [PATCH] gnu: Add scmutils. > > * gnu/packages/scheme.scm (scmutils): New variable.

[PATCH] gnu: Add r-qtl.

* gnu/packages/bioinformatics.scm (r-qtl): New variable. --- gnu/packages/bioinformatics.scm | 22 ++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a13fd7a..cc6a418 100644 ---

[PATCH 0/5] New packages, simple fixes for openstack/python

Nothing too fancy, these patches are probably almost ready to be pushed :) -- Cyril Roelandt (5): gnu: Add python-prettytable gnu: Fix the definition of python2-pyflakes-0.8.1. gnu: Add python2-pyflakes. gnu: Add python-mccabe-0.2.1 gnu: Add python2-keyring. gnu/packages/python.scm |

Re: New Install

Hi! On Thu 17 Sep 2015 14:06, Richard writes: > - It is feasible/straightforward to install guixsd to a spare partition > without affecting the existing OS (slackware) on my machine? (My other > machine is burdened with Windows and dual-booting that is a challenge >

[PATCH] New procedure for CRAN URIs.

Hi Guix, after it was reported that the plain CRAN URI only points to the latest version of a package and previous versions are archived at a different URI, I took Dave’s advice and wrote a ‘cran-uri’ procedure that produces a list of URI strings for a given R package name and a version. Only

Re: [PATCH 4/5] gnu: Add python-mccabe-0.2.1

Cyril Roelandt writes: > * gnu/packages/python.scm (python-mccabe-0.2.1, > python2-mccabe-0.2.1): New variables. > --- > gnu/packages/python.scm | 18 ++ > 1 file changed, 18 insertions(+) > > diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm >

Re: [Patch] Bitcoin

Andreas Enge writes: > the attached new file contains the "standard" bitcoin client. It seems > to work. Comments are welcome. Can you send it in a 'git format-patch' form? It would be easier to review. Thanks. -- Mathieu Lirzin

Re: [PATCH 1/5] gnu: Add python-prettytable

Cyril Roelandt writes: > * gnu/packages/python.scm (python-prettytable, > python2-prettytable): New variables. LGTM. Thanks. -- Mathieu Lirzin

Re: [PATCH 3/5] gnu: Add python2-pyflakes.

Cyril Roelandt writes: > * gnu/packages/python.scm (python2-pyflakes): New variable. > --- > gnu/packages/python.scm | 3 +++ > 1 file changed, 3 insertions(+) IMO the previous patch should be squash into this one. Otherwise LGTM. Thanks. -- Mathieu Lirzin

Re: [PATCH] download: Fix some minor progress-logging regressions.

Steve Sprang writes: > From 11440f61cebd49d31d165f6433ec6e4b1afe728f Mon Sep 17 00:00:00 2001 > From: Steve Sprang > Date: Thu, 17 Sep 2015 04:22:01 -0700 > Subject: [PATCH] download: Fix some minor progress-logging regressions. > > *

Re: [PATCH 4/5] gnu: Add python-mccabe-0.2.1

On 09/17/2015 07:38 PM, Mathieu Lirzin wrote: > Could you be more precise about what package(s) or context requires it? That is python-hacking, though I haven't added it yet, since I stumbled upon other issues while packaging it :) I'll use a Guix-formatted name. Cyril.

Re: [Patch] Bitcoin

On Thu, Sep 17, 2015 at 08:32:24PM +0200, Mathieu Lirzin wrote: > Can you send it in a 'git format-patch' form? It would be easier to > review. Thanks. Sure, here it is. I did not make a real patch before as I was unsure about the file name. Of course the package compiles; I tried the Qt-based

Re: [PATCH] gnu: Add r-qtl.

Pjotr Prins writes: > * gnu/packages/bioinformatics.scm (r-qtl): New variable. > --- > gnu/packages/bioinformatics.scm | 22 ++ > 1 file changed, 22 insertions(+) [...] > +(build-system r-build-system) > +(home-page "http://www.rqtl.org;)