Tobias Geerinckx-Rice writes:
> On 14/09/16 15:45, Marius Bakke wrote:
>> It's not visible in the cgit interface, but it actually seems to
>> support normal snapshot downloads:
>> https://git.kernel.org/cgit/utils/cpu/mce/mcelog.git/snapshot/v141.tar.gz
>
> I d
Tobias Geerinckx-Rice writes:
> * gnu/packages/linux.scm (mcelog): New variable.
Thanks!
> ---
> gnu/packages/linux.scm | 41 +
> 1 file changed, 41 insertions(+)
>
> diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
> index 3ec6514..fc4faa4 1
Alex Kost writes:
> Marius Bakke (2016-08-17 16:18 +0100) wrote:
>
>> ..and here is a patch that moves tre.scm over as well. The code is
>> unchanged apart from license: prefix.
>>
>> From 8e673ebd8c68c3a92fa60b56068339c011607752 Mon Sep 17 00:00:00 2001
>>
* gnu/packages/python.scm (python-pytest-pep8, python2-pytest-pep8): New
variables.
---
gnu/packages/python.scm | 33 +
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 8b9273c..21eda38 100644
--- a/gnu/package
* gnu/packages/python.scm (python-natsort, python2-natsort): New variables.
---
gnu/packages/python.scm | 49 +
1 file changed, 49 insertions(+)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index bd70cb6..f8e25d4 100644
--- a/gnu/p
* gnu/packages/python.scm (python-pytest-flakes, python2-pytest-flakes):
New variables.
---
gnu/packages/python.scm | 42 ++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 21eda38..bd70cb6 100644
---
Ben Woodcroft writes:
> Hi Marius, thanks for the patch.
>
> I added a 'python2-variant' line and pushed as 'b30565b'.
*facepalm* thanks. Here I was wondering why my next patches didn't build
for python2. You may want to do the same for "python-freezegun" above.
Btw, it seems you missed a coupl
Marius Bakke writes:
> Leo Famulari writes:
>
>> Changing the subject, you could disable the tests per-architecture. Look
>> for uses of current-target-system and current-system for usage examples.
>> But this is not absolutely required, IMO.
>
> This latest patch
>From e924847f7f1b226b7abe2dcf176d83b9ae2852d5 Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Sat, 10 Sep 2016 11:19:37 +0100
Subject: [PATCH] gnu: Add python-cachecontrol.
* gnu/packages/python.scm (python-cachecontrol, python2-cachecontrol):
New variables.
---
gnu/packages/python.
Kei Kebreau writes:
> For those who love making tracks, X11 or not!
>
> If someone could look over this (and build it, please!), that would be
> nice. :-)
Thanks for this package! See comments below.
> From 91dbcb5c61de4b4b45f85b3bad8cf9e713c564b0 Mon Sep 17 00:00:00 2001
> From: Kei Kebreau
>
Danny Milosavljevic writes:
> Hi,
>
> how do I use "every" in a guix package declaration?
>
> When I add #:modules (sfri sfri-1) I get a message that guix-build is
> undefined (?).
I think when setting #:modules, you also have to specify the
"expected" ones, i.e. it will override the defaults ra
Marius Bakke writes:
> The program seems to bundle {khash,kseq}.h from htslib. Could you try
> replacing them with the files directly from htslib? There are quite a
> few examples of doing this already in bioinformatics.scm.
The released version bundles a few unnecessary header file
Ben Woodcroft writes:
> Well, despite the lightness of my touch, it seems the licensing is in now in
> order. I've updated the package, here's an updated patch. Better?
I don't think this was intended to be a commit message? :)
The program seems to bundle {khash,kseq}.h from htslib. Could you
re may be others on MIPS failing after the timeout, but extending the
list should be obvious.
Thanks for your patience!
>From 331d291cabcb5d17d0284414cae1f2ac5c32736a Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Tue, 23 Aug 2016 21:17:14 +0100
Subject: [PATCH 1/3] gnu: dlib: Remove unus
ng0 writes:
> +(arguments
> + `(;; XXX: make 'check' is run with 'make all', however the 'all' phase
> takes
> + ;; 30+ minutes on a AMD FX-4300 Quad-Core Processor buildmachine.
> + #:tests? #f
30 minutes isn't bad, we have packages that takes longer. As long as it
prints s
Leo Famulari writes:
> On Thu, Sep 01, 2016 at 11:00:39AM +0100, Marius Bakke wrote:
>> I had these in inputs initially and was surprised to see no references.
>> Both seems to be compiled into the final program[0]: when running "mash
>> info" on an invalid file (t
ng0 writes:
> From 30c8260a039d4c8d7cddbfd92341afa65577d680 Mon Sep 17 00:00:00 2001
> From: ng0
> Date: Tue, 6 Sep 2016 17:10:18 +
> Subject: [PATCH 1/3] gnu: Add libasr.
>
> * gnu/packages/web.scm (libasr): New variable.
Nice!
> ---
> gnu/packages/web.scm | 33 ++
Leo Famulari writes:
> On Sat, Sep 03, 2016 at 11:32:20AM +0100, Marius Bakke wrote:
>> Many distros prefix OpenBSD projects with ambigous names with
>> "openbsd-". E.g. "openbsd-netcat", "openbsd-ntpd" etc. We don't appear
>> to have that
Brendan Tildesley writes:
> I just notice the configure script wasn't looking for any newer version.
[...]
> checking libpng/png.h usability... no
> checking libpng/png.h presence... no
> checking for libpng/png.h... no
> checking libpng10/png.h usability... no
> checking libpng10/png.h presenc
Brendan Tildesley writes:
> On 2016-09-03 22:38, Marius Bakke wrote:
>> Marius Bakke writes:
>>
>>> Additionally this package bundles "m4" even if it doesn't use it. Can
>>> you remove it with a "origin" snippet? See e.g. "xcb-util
Marius Bakke writes:
> Additionally this package bundles "m4" even if it doesn't use it. Can
> you remove it with a "origin" snippet? See e.g. "xcb-util-xrm" for how
> that's done.
My mistake, it does appear to use those files, and it's n
Andreas Enge writes:
> On Fri, Sep 02, 2016 at 02:50:28PM -0400, Leo Famulari wrote:
>> On Fri, Sep 02, 2016 at 08:01:55PM +0200, Hartmut Goebel wrote:
>> > Am 02.09.2016 um 16:49 schrieb Leo Famulari:
>> > > +(name "acme-client")
>> > I strongly suggest using a different name, as this is *on
Brendan Tildesley writes:
> From 64ca4155a754a93b26a1002185950f49469197f3 Mon Sep 17 00:00:00 2001
> From: Brendan Tildesley
> Date: Sat, 3 Sep 2016 05:53:56 +1000
> Subject: [PATCH] gnu: Add libicns
>
> * gnu/packages/image.scm (libicns): New variable
Thanks! Nit-pick: we end commit messages a
Alex Kost writes:
> Marius Bakke (2016-09-01 18:41 +0300) wrote:
>
>> From f1bccf9bf26088107b6fec31eece30676d5a362f Mon Sep 17 00:00:00 2001
>> From: Marius Bakke
>> Date: Wed, 17 Aug 2016 17:45:24 +0100
>> Subject: [PATCH] gnu: Add python-odfpy.
>>
>&g
>From f1bccf9bf26088107b6fec31eece30676d5a362f Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Wed, 17 Aug 2016 17:45:24 +0100
Subject: [PATCH] gnu: Add python-odfpy.
* gnu/packages/python.scm (python-odfpy, python2-odfpy): New variables.
---
gnu/packages/python.scm |
Leo Famulari writes:
>> + (add-after 'unpack 'fix-includes
>> + (lambda _
>> + (substitute* '("src/mash/Sketch.cpp"
>> "src/mash/CommandFind.cpp")
>> + (("^#include \"kseq\\.h\"")
>> +"#include \"htslib/kseq.h\""))
>> + #t)
> Done and done! New patches attached.
Oops, forgot to refresh my local branch. Here are the actual new
patches.
>From e1606ba7814ff218a5670aab22b57686b71f2922 Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Wed, 31 Aug 2016 15:37:18 +0100
Subject: [PATCH 1/2] gnu: Add xcb-util-xrm.
.
Good catch!
>> + (uri (string-append
>> +
>> "https://github.com/Airblader/xcb-util-xrm/releases/download";
>
> Also this line a bit too long :)
Done and done! New patches attached.
>From 002e487185df0f6c5ad38c297ee77c9d1150841a M
d the convention of the other xcb-util-* libraries.
Disclaimer: untested, apart from building with rounds=2.
>From 002e487185df0f6c5ad38c297ee77c9d1150841a Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Wed, 31 Aug 2016 15:37:18 +0100
Subject: [PATCH 1/2] gnu: Add xcb-util-xrm.
* gnu/
David Craven writes:
> Are you packaging lightdm? I started packaging lightdm before sddm.
> But then I realized that it doesn't support (and probably never will)
> wayland sessions. Looks to me like another we are ubuntu and we are
> doing our own thing kind of project... ;-)
No immediate plans
Hi,
This change is to make room for SDDM and other display managers such as
lightdm.
I did not add a copyright line as I consider "git mv" a trivial
operation.
>From a7e59cb154bd11e7ca04f68753982b21bef22b10 Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Wed, 31 Aug 2016 1
Eric Bavier writes:
> Thanks for the patch! Comments below:
>
> On Tue, 30 Aug 2016 19:17:14 +0100
> Marius Bakke wrote:
>
>> From 5e96b895c1ed77a6bfdcbe5c6dbd68220fd5a8dc Mon Sep 17 00:00:00 2001
>> From: Marius Bakke
>> Date: Fri, 12 Aug 2016 02:29:51 +0100
Brendan Tildesley writes:
> This marks my first attempt at writing a package definition for Guix.
> Please assume it is broken since I still don't know what I'm doing, and
> forgive me if you need to school me on things written in the manual. If
> someone on GuixSD could test if it builds, load a
>From 5e96b895c1ed77a6bfdcbe5c6dbd68220fd5a8dc Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Fri, 12 Aug 2016 02:29:51 +0100
Subject: [PATCH 1/1] gnu: Add gzstream.
* gnu/packages/compression.scm (gzstream): New variable.
---
gnu/packages/compression.scm |
>From 2097408c8e94d10423d4a156caa5298d6dcb Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Tue, 30 Aug 2016 18:49:21 +0100
Subject: [PATCH 1/1] gnu: Add mash.
* gnu/packages/bioinformatics.scm (mash): New variable.
---
gnu/packages/bioinformatics.scm |
Marius Bakke writes:
> Leo Famulari writes:
>
>> On Wed, Aug 24, 2016 at 11:26:28AM +0100, Marius Bakke wrote:
>>> There are a couple of things going on in this thread:
>>>
>>> 1. Segfault on x86_64. This seems to have been resolved simply by
>>>
David Craven writes:
> * gnu/packages/hawaii.scm (sddm): New variable.
IMO this should go in display-managers.scm.
Even better if we can rename slim.scm first, to avoid moving it later.
> +(license license:gpl2)))
This should be gpl2+. Additionally there are some expat and CC-BY files
acc
> 2 files changed, 4 insertions(+), 6 deletions(-)
> gnu/local.mk | 1 +
> gnu/packages/ola.scm | 9 +++--
Perhaps this could be added to something like automation.scm?
Or iot.scm?
> +(synopsis "Framework for controlling entertainment lighting equipment")
> +(description "The O
Alex Vong writes:
>> PS. regarding the man page, I believe Debian mostly generated this
>> page from the capnp tool's help text. I'd accept a patch to
>> c++/src/kj/main.c++ which adds some code to generate man XML format
>> directly, so that we don't have to maintain the same text in multiple
>>
Kenton Varda writes:
> Hi, Cap'n Proto upstream author here. Noticed this thread in a Google
> search, thought I'd comment.
>
> To shed some light on the googletest situation:
>
> The googletest maintainers have deemed that googletest should never
> ever be system-installed, and have even disable
Leo Famulari writes:
> On Wed, Aug 24, 2016 at 11:26:28AM +0100, Marius Bakke wrote:
>> There are a couple of things going on in this thread:
>>
>> 1. Segfault on x86_64. This seems to have been resolved simply by
>> updating OpenBLAS. At least, I'm no longer a
David Craven writes:
>> (device "my-root")
>
>> (device "my-boot")
>
> device should be a path to the device node and should look something
> like /dev/sda1 and /dev/sda2.
>
>> (title 'label)
>
>> (title 'label)
>
> remove these
(title 'label) instructs the boot routine to look for a partition o
Marius Bakke writes:
>> Without OpenBLAS dlib will use an internal BLAS implementation. I'm
>> fairly certain that will at least fix the crash on x86_64, which was
>> a segfault in libopenblasp-r0.2.15.so when we had LAPACK in inputs, but
>> seems to consistentl
> Without OpenBLAS dlib will use an internal BLAS implementation. I'm
> fairly certain that will at least fix the crash on x86_64, which was
> a segfault in libopenblasp-r0.2.15.so when we had LAPACK in inputs, but
> seems to consistently trigger on Hydra regardless.
>
> I got busy this weekend, b
Leo Famulari writes:
> On Sat, Aug 20, 2016 at 01:22:30PM +0100, Marius Bakke wrote:
>> Subject: [PATCH] gnu: Add capnproto.
>>
>> * gnu/packages/serialization.scm (capnproto): New variable.
>
> Thanks, pushed as 557d3328!
Cheers!
> By the way, I noticed some ot
Ben Woodcroft writes:
> On 21/08/16 16:17, Leo Famulari wrote:
>> On Fri, Aug 19, 2016 at 11:52:37AM +0100, Marius Bakke wrote:
>>> Leo Famulari writes:
>>>
>>>> I pushed the patch as 5f0ff6a9e. Hopefully dlib is still useful without
>>>> la
Leo Famulari writes:
> On Fri, Aug 19, 2016 at 06:06:24PM -0400, Leo Famulari wrote:
>> On Sun, Aug 14, 2016 at 07:16:22PM +0100, Marius Bakke wrote:
>> > Leo Famulari writes:
>> >
>> > > On Sat, Aug 13, 2016 at 07:48:36PM +0100, Marius Bakke wrote:
>
David Craven writes:
>> Another emacs/notmuch user checking in. I was in the same boat as you
>> until trying out spacemacs ~two years ago:
>>
>> https://github.com/syl20bnr/spacemacs
>>
>> Give it a go, if you haven't already :)
>
> @marius:
> Did you get the guix plugin working? Does it need an
Leo Famulari writes:
> When moving packages around, all users of the package need to have their
> module imports updated. Copyright attribution must be carefully handled.
> And merging the various *-updates branches into master and vice versa
> becomes more complicated and prone to error.
Perhap
David Craven writes:
>> I usually attach the patches as files, in notmuch emacs they are saved
>> by pressing
>> . s
>> when in the displayed attached files part. Or what exactly do you mean?
>
> Yep that's what I mean. I'm currently doing this:
> Look at the patch in gmail
> touch 0.patch
> copy
Leo Famulari writes:
> On Wed, Aug 17, 2016 at 04:18:48PM +0100, Marius Bakke wrote:
>> Marius Bakke writes:
>>
>> > Leo Famulari writes:
>> >
>> >> On Mon, Aug 15, 2016 at 02:05:16PM +0100, Marius Bakke wrote:
>> >>>
>> >&
Leo Famulari writes:
> I pushed the patch as 5f0ff6a9e. Hopefully dlib is still useful without
> lapack. We should really figure out what the issue is and fix it :)
I noticed this fails to build on Hydra. What's worse is that the i686,
x86_64 and armhf targets fails at completely different thing
Hartmut Goebel writes:
> Hi,
>
> I'm currently working on django, the web application framework.
> Unfortunalty some tests fail. These are all testing time- and timezone
> calculations.
>
> Failures are like this:
>
> AssertionError: datetime.timedelta(0, 3600, 16) not less than
> datetime.timede
>From aa54aaee18b096780220f85a02b7e036458858a2 Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Wed, 17 Aug 2016 17:45:24 +0100
Subject: [PATCH] gnu: Add python-odfpy.
* gnu/packages/python.scm (python-odfpy, python2-odfpy): New variables.
---
gnu/packages/python.scm |
Marius Bakke writes:
> Leo Famulari writes:
>
>> On Mon, Aug 15, 2016 at 02:05:16PM +0100, Marius Bakke wrote:
>>>
>>> I wasn't sure where to put this, so went with its own file. It does not
>>> fully implement PCRE so pcre.scm seems inappro
Ben Woodcroft writes:
> On 17/08/16 09:45, Leo Famulari wrote:
>> On Wed, Aug 17, 2016 at 09:31:11AM +1000, Ben Woodcroft wrote:
>>>
>>> On 17/08/16 06:47, Leo Famulari wrote:
>>>> On Tue, Aug 16, 2016 at 11:45:16AM +0100, Marius Bakke wrote:
>>&
Leo Famulari writes:
> On Mon, Aug 15, 2016 at 02:05:16PM +0100, Marius Bakke wrote:
>>
>> I wasn't sure where to put this, so went with its own file. It does not
>> fully implement PCRE so pcre.scm seems inappropriate. Perhaps that could
>> be renamed to reg
Marius Bakke writes:
> Leo Famulari writes:
>
>> On Mon, Aug 15, 2016 at 03:01:00PM +0100, Marius Bakke wrote:
>>>
>>> > From c95b25a3ad4902ccdef79c7429485a7cacc72e1c Mon Sep 17 00:00:00 2001
>>> > From: Marius Bakke
>>> > Date: Sun, 1
> Please find updated patch below. Thanks for the feedback!
Ugh. Missed a commit when squashing. Here is the final patch:
>From bb50f5c0d960625483e8db15a270a7f17d5d2d9c Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Mon, 15 Aug 2016 16:06:37 +0100
Subject: [PATCH] gnu: Add minced.
nd Clustered Regularly Interspaced Short
>> +Palindromic Repeats (CRISPRs) in full genomes or environmental datasets such
>> +as metagenomes, in which sequence size can be anywhere from 100 to 800 bp.")
> That description which you took from the README is a little dated at the
&
Leo Famulari writes:
> On Mon, Aug 15, 2016 at 03:01:00PM +0100, Marius Bakke wrote:
>>
>> > From c95b25a3ad4902ccdef79c7429485a7cacc72e1c Mon Sep 17 00:00:00 2001
>> > From: Marius Bakke
>> > Date: Sun, 14 Aug 2016 16:47:33 +0100
>> &g
Ben Woodcroft writes:
> On 16/08/16 08:28, Leo Famulari wrote:
>> On Mon, Aug 15, 2016 at 09:29:11PM +0100, Marius Bakke wrote:
>>> Leo Famulari writes:
>>>> Running test_empirical_kernel_map / phase `check' failed after 2043.7
>>>> seconds
>&g
Leo Famulari writes:
> On Mon, Aug 15, 2016 at 12:51:15PM +0100, Marius Bakke wrote:
>> Date: Sat, 13 Aug 2016 11:26:10 +0100
>> Subject: [PATCH] gnu: Add dlib.
>>
>> * gnu/packages/machine-learning.scm (dlib): New variable.
>
> Thanks for the updated patch.
>From 017a593d407a36ca98736b95b7413f180a7735d4 Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Mon, 15 Aug 2016 16:06:37 +0100
Subject: [PATCH] gnu: Add minced.
* gnu/packages/bioinformatics.scm (minced): New variable.
---
gnu/packages/bioinformatics.scm |
> From c95b25a3ad4902ccdef79c7429485a7cacc72e1c Mon Sep 17 00:00:00 2001
> From: Marius Bakke
> Date: Sun, 14 Aug 2016 16:47:33 +0100
> Subject: [PATCH] gnu: Add python-reportlab.
>
> * gnu/packages/python.scm (python-reportlab, python2-reportlab): New
> variables.
I wasn't sure where to put this, so went with its own file. It does not
fully implement PCRE so pcre.scm seems inappropriate. Perhaps that could
be renamed to regex.scm or similar.
>From c8aa1ecab5176dc9d2b02a4063936b77039af163 Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Sun, 14
>From c95b25a3ad4902ccdef79c7429485a7cacc72e1c Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Sun, 14 Aug 2016 16:47:33 +0100
Subject: [PATCH] gnu: Add python-reportlab.
* gnu/packages/python.scm (python-reportlab, python2-reportlab): New
variables.
---
gnu/packages/python.scm |
C++")
>> +(description
>> + "Dlib is a modern C++ toolkit containing machine learning algorithms
>> and tools. It
>> +is used in both industry and academia in a wide range of domains including
>> robotics,
>> +embedded devices, mobile phones, and large high per
ad of
> chdir-ing back and forth.
>
>> + (add-after 'check 'ascend-to-build-directory
>> + (lambda _ (chdir "../../../../build") #t))
>
> Then, this phase can be removed.
That worked great, thanks!
New patch attached.
>From 5e30eff1cf24b23
Leo Famulari writes:
> On Sat, Aug 13, 2016 at 07:48:36PM +0100, Marius Bakke wrote:
>> Note that it bundles googletest; I tried unbundling but it proved
>> difficult. gtest will no longer be used from the 0.6 release so I did
>> not think a comment was necessary.
>
>
ep 17 00:00:00 2001
From: Marius Bakke
Date: Sat, 13 Aug 2016 19:01:49 +0100
Subject: [PATCH] gnu: Add capnproto.
* gnu/packages/capnproto.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
---
gnu/local.mk | 1 +
gnu/packages/capnproto.
Hi,
This adds the dlib machine learning toolkit.
Cheers,
Marius
>From 9a24f0bfd8a0375928d7accdc0ef744f4fa304a0 Mon Sep 17 00:00:00 2001
From: Marius Bakke
Date: Sat, 13 Aug 2016 11:26:10 +0100
Subject: [PATCH] gnu: Add dlib.
* gnu/packages/machine-learning.scm (dlib): New variable.
---
Hi Guix,
I have been lurking about for a while and will be contributing on a
regular basis from here on. Please excuse the backlog ;)
Looking forward to your feedback.
First out: fio.
Cheers,
Marius
>From 5b8da4acdaed17661f075290db917f2a760db965 Mon Sep 17 00:00:00 2001
From: Marius Ba
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