For the moment one just treats the FLAIR as a T2w scan for the purposes of the pipelines.
Peace,
Matt.
From: hcp-users-boun...@humanconnectome.org on behalf of Michael Dwyer mgdw...@bnac.net
Date: Sunday, June 21, 2015 at 8:24 PM
To: Gaurav Patel gauravpa...@gmail.com
Cc: HCP Users
Hi again Michael,
Thanks again for your input.
I have made the following changes to the FreeSurferPipeline.sh script.
They are not quite the same as your changes, because for the time being
I want to maintain a level of backward compatibility. That is, if NSLOTS
is set, we'll use it to determine
Thanks Tim. FWIW it might add flexibility to make the # of cores a command
line option to the script.
-M
On Mon, Jun 22, 2015 at 4:31 PM, Timothy B. Brown tbbr...@wustl.edu wrote:
Hi again Michael,
Thanks again for your input.
I have made the following changes to the FreeSurferPipeline.sh
Michael,
Once again, thanks for pointing this problem out.
I have altered the following scripts in the Examples/Scripts directory
so that the loop which is parsing command line options reports an error
on unrecognized option specifications and exits from the script. They do
not supply usage
Hi Levi,
Yes, it would be helpful in investigating the error you are receiving to
see both the script you are running and a capture of the exact output
you are getting from a run of the script. That output might help to
determine if the ERROR: could not open file being reported by the imcp
Thanks. By the way, have you been able to see any cortical demyelination in
neurological diseases like multiple sclerosis with this myelin mapping
technique, or only used it on healthy controls and neuropsychiatric disease
so far?
On Mon, Jun 22, 2015 at 11:26 AM, Glasser, Matthew
Hi Michael,
Thank you for sharing the results of your debugging efforts.
In response to your message and to some difficulties/questions that
students had in the recent HCP course, I have changed the example
SetUpHCPPipeline.sh script in the Examples/Scripts directory so that it
looks like the
I’ve not done that, but perhaps someone else has.
Peace,
Matt.
From: Michael Dwyer mgdw...@bnac.net
Date: Monday, June 22, 2015 at 3:12 PM
To: Matt Glasser glass...@wusm.wustl.edu
Cc: Gaurav Patel gauravpa...@gmail.com, HCP Users HCP-Users@humanconnectome.org
Subject: Re: [HCP-Users]
