Munira,
We will soon (hopefully in a week or two) be releasing the materials for the
week-long HCP course given last month in Honolulu. This will include
practicals and associated datasets (plus lecture notes) for all of the HCP
modalities covered in the course, including MEG. It is likely th
Hi
The call (using FSLNets) to do the hierarchical clustering is briefly mentioned
in the PTN documentation - see the section on:
"view hierarchical clustering of nodes"
But as this is primarily just a convenient way of displaying the netmats we did
not include the outputs of that in the PTN re
The MEG data uses a different surface resolution than the MRI data, so the
MRI spec file and data cannot be visualized in the same instance of
workbench.
You were on the right track with what you did first, opening the *.surf.gii
and related MEG data files. You may need to switch the viewing mode
Hello,
I have a problem with visualisation using Connectome Workbench. Could
you give me some instructions what should I do in my case, please?
First, I took MEG data of resting state for a subject from 500
Subjects+MEG2 Release and applied to it all pipelines described in the
Reference Ma
Thanks for the reply. I've made some edits to the PreFreeSurfer pipeline
that allow me to run it without the T2 or the field map, and I'm wondering
whether they're sensible. Specifically, I've
1) Set AvgrdcSTRING to "NONE" in PreFreeSurferPipelineBatch.sh.
2) Set Modalities to "T1w" in PreFreeS
Missing:
--target3='seeds'
Moises
On 10 July 2015 at 14:48, Maarten Vaessen wrote:
> I tried this and here I get the error:
>
> Done loading samples.
> does not exist
>
> Using the command:
> probtrackx2 -x L.STS.fsl.gii --onewaycondition --omatrix3
> --lrtarget3=../fsaverage_LR32k/1028
I tried this and here I get the error:
Done loading samples.
does not exist
Using the command:
probtrackx2 -x L.STS.fsl.gii --onewaycondition --omatrix3
--lrtarget3=../fsaverage_LR32k/102816.L.white.32k_fs_LR.surf.gii -P 50
--forcedir --dir=./test_surf_track_STS_Lwhite -s
../Diffusion.bedpostX/m
Hi Maarten,
you can use Matrix3:
--omatrix3 --target3='seeds' --lrtarget3='wholebrain'
Best,
Moises.
On 10 July 2015 at 11:12, Maarten Vaessen wrote:
> Thanks for the reply. I am using FSL v5.0.8, but have also tried with
> 5.0.6.
>
> Does that mean that there is no way to do seed-to-wholebra
Thanks for the reply. I am using FSL v5.0.8, but have also tried with 5.0.6.
Does that mean that there is no way to do seed-to-wholebrain connectivity
based on surfaces right now? Or is it possible to do a similar thing using
one of the other --omatrix options?
-M
On Thu, Jul 9, 2015 at 5:49 PM
