Re: [HCP-Users] tractography

The conversion was done like this: wb_command -gifti-label-to-roi ../../MNINonLinear/fsaverage_LR32k/102816.L.aparc.a2009s.32k_fs_LR.label.gii L.STS.func.gii -name S_temporal_sup surf2surf -i ../../MNINonLinear/fsaverage_LR32k/102816.L.white.32k_fs_LR.surf.gii -o L.STS.fsl_MNI_new.asc

[HCP-Users] ft_read_cifti too many grayordinates

Hi, When I use ft_read_cifti to load the dense connectome I end up with 96854*96854 grayordinates and lots of NaN's. This appears to be because the centre of the brain is included in the cortical surfaces, which I can remove manually to end up with the expected 91282 grayordinates and no

Re: [HCP-Users] ft_read_cifti too many grayordinates

Some of us dont think that code should do that. You can manually remove the NaNs, or use alternative software (option B): https://wiki.humanconnectome.org/display/PublicData/HCPUsersFAQ Peace, Matt. From: hcp-users-boun...@humanconnectome.org on behalf of Janine Bijsterbosch

[HCP-Users] Modifying N-back for a single monitor

Hi, I was following the instructions on how to modify the task for a single monitor and I believe I followed them all correctly but I am now getting an error. It says that Left of . must be an object, structure, dialog. The line the error is referring to says ExperimenterWindow.ActiveState =

Re: [HCP-Users] tractography

No I meant the dot convert. Matt. From: Maarten Vaessen m.vaes...@gmail.com Date: Monday, July 20, 2015 at 3:29 AM To: Matt Glasser glass...@wusm.wustl.edu Cc: hcp-users@humanconnectome.org hcp-users@humanconnectome.org Subject: Re: [HCP-Users] tractography The conversion was done

Re: [HCP-Users] tractography

Ah, of course! That is: wb_command -probtrackx-dot-convert fdt_matrix3.dot test_dot_to_cifti.dconn.nii -col-surface L.STS.func.gii -row-cifti 91282_Greyordinates.dscalar.nii COLUMN -transpose On Mon, Jul 20, 2015 at 5:54 PM, Glasser, Matthew glass...@wusm.wustl.edu wrote: No I meant the dot

Re: [HCP-Users] Parcellations in cifti

Hi Janine, The Yeo et al. 2011, 7 and 17 Resting state Network parcellations in CIFTI format (in the RSN-networks.32k_fs_LR.dlabel.nii file) are available in the Workbench v1.0 Tutorial dataset and in the Group Average (R440/U100) dataset that are both available for download on the 500 Subjects

[HCP-Users] Parcellations in cifti

Hi, I was wondering if there are any cortical parcellations (such as those in Freesurfer or Yeo et al, 2011) available in cifti format please? Thanks!! Best wishes, Janine - Dr Janine Bijsterbosch Postdoctoral Researcher FMRIB Centre, University of Oxford John Radcliffe Hospital Oxford,