Re: [HCP-Users] Custom parcellation for HCP data

2015-12-16 Thread Simon Baker
Fantastic. Thanks again. On 17 December 2015 at 09:28, Jennifer Elam wrote: > Yes, the structural extended packages will be included in the S900 > Connectome in a Box. > > > > FYI, because of the size of this data and competing HCP priorities, S900 > Connectome in a Box will likely be not avail

Re: [HCP-Users] Custom parcellation for HCP data

2015-12-16 Thread Jennifer Elam
Yes, the structural extended packages will be included in the S900 Connectome in a Box. FYI, because of the size of this data and competing HCP priorities, S900 Connectome in a Box will likely be not available until mid-late February 2016. We are still deciding when to open the website for

Re: [HCP-Users] Custom parcellation for HCP data

2015-12-16 Thread Simon Baker
Hi Jenn, Thanks for your advice about the structural extended preprocessed data packages. Precisely what we needed. Is this data available as part of Connectome in a Box? i.e., Can we request this data to be included when we order a copy of the 900 subjects release? Thank you, Simon On 16 Nove

Re: [HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Gregory Butron
I don't want to keep this thread running forever, but another fantastic way to get access to the data is Amazon's aws command line interface https://aws.amazon.com/cli/ It's an official amazon product for windows, linux, and mac, and it allows you to automate any downloads from the server. For ins

[HCP-Users] How to make a folder shared between Windows and VM by Timothty .B Brown

2015-12-16 Thread Rosalia Dacosta Aguayo
Hi Rosalia, How to create a folder that is shared between the host and guest (VM) would depend on what tool you are using to run your VM in the first place. If you are using VMware (Player or Workstation) I would suggest you have a look at the document *VMware Workstation 5.0 Using Shared Folders

Re: [HCP-Users] connectome in a box disk configurations

2015-12-16 Thread Timothy Coalson
Well, unfortunately I found out that we make the disk sets by rsync, not by a disk image byte copy, so we don't know what all of the original bytes of the disks were. We could probably say what the starting offset of the partition was, but if the RAID label is any larger than a partition table, th

Re: [HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Timothy B. Brown
Hi Rosalia, How to create a folder that is shared between the host and guest (VM) would depend on what tool you are using to run your VM in the first place. If you are using VMware (Player or Workstation) I would suggest you have a look at the document *VMware Workstation 5.0 Using Shared Folders

Re: [HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Hodge, Michael
Tim and Greg's suggestions are good ones (using Amazon S3 or Aspera via Windows). I believe the Aspera plugin for Linux is still the older NPAPI style plugin, which Chrome no longer supports. The Windows plugin is a PPAPI style plugin which is supported. You might have some success with Fire

Re: [HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Timothy B. Brown
I use an Ubuntu 15.04 VM. My Ubuntu VM is running with Windows 7 as the host operating system.  Even from back when I used Ubuntu 14.04 or Ubuntu 14.10, I have never been able to succeed in getting Aspera to work with either Chromium or Firefox when running in my Ubuntu VM.  Even after successfully

Re: [HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Gregory Butron
Just a note, I was never able to get aspera to work properly in ubuntu 14.04. Instead I used dragon disk to connect to the amazon server directly and it worked very well. On Dec 16, 2015 2:00 PM, "Timothy Coalson" wrote: > With a .sh file, you don't use "apt-get install", it is a script that you

Re: [HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Timothy Coalson
With a .sh file, you don't use "apt-get install", it is a script that you run directly in a terminal: tim@timsdev:~/Downloads$ ./aspera-connect-3.6.0.106805-linux-64.sh Installing Aspera Connect Deploying Aspera Connect (/home/tim/.aspera/connect) for the current user only. Restart firefox manua

Re: [HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Donna Dierker
Hi Rosalia, I hope someone can help with the Aspera issue -- sounds hard! If you do need both workbench AND caret, then you should not need Aspera to download tutorial data for caret; those are typically zip files available directly on brainvis.wustl.edu or on sumsdb.wustl.edu. Which tutorial

[HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

2015-12-16 Thread Rosalia Dacosta Aguayo
Dear Caret and Workbench team, I have registered to workbench and I I had downloaded workbench for linux 64bitsok...no problem with this...and with the tutorial...the problem is when trying to download your images in order to do the tutorials. The problem is with downloading the data it a

Re: [HCP-Users] connectome in a box disk configurations

2015-12-16 Thread Timothy Coalson
Creating any kind of raid array on a disk nearly always involves labeling the disk with the raid configuration, which probably overwrote the partition table (and is hidden from the exposed raid-0 "disk", causing the "disk" to shrink and start at a different offset). Hardware raid controllers are u

Re: [HCP-Users] ROI parcellation

2015-12-16 Thread Joelle Zimmermann
Thanks Jennifer and Matt! On Tue, Dec 15, 2015 at 9:05 PM, Glasser, Matthew wrote: > We’ll have a multi-modally based parcellation for the MSMAll CIFTI data > soon. > > Peace, > > Matt. > > From: on behalf of Jennifer Elam < > el...@pcg.wustl.edu> > Date: Tuesday, December 15, 2015 at 3:51 PM >

[HCP-Users] connectome in a box disk configurations

2015-12-16 Thread Bogdan Petre
Hi everyone, We've recently ordered connectome in a box and have been having some trouble accessing the data on the disks. The disks did not appear to have valid partition tables on them which could be recognized by our linux servers, and I was wondering if I could get some details from anybody wh