Re: [HCP-Users] MSM binaries versions

2019-04-04 Thread Moataz Assem
piled for >v1.0.0 and not v3.0.0, am I right? > >Thanks > >Moataz > >From: Harms, Michael [mha...@wustl.edu] >Sent: 04 April 2019 21:56 >To: Glasser, Matthew; NEUROSCIENCE tim; Moataz Assem >Cc: hcp-users@humanconnectome.org >Subject: Re: [HCP-Users]

Re: [HCP-Users] MSM binaries versions

2019-04-04 Thread Glasser, Matthew
el [mha...@wustl.edu] >Sent: 04 April 2019 21:56 >To: Glasser, Matthew; NEUROSCIENCE tim; Moataz Assem >Cc: hcp-users@humanconnectome.org >Subject: Re: [HCP-Users] MSM binaries versions > >Also, see here >https://github.com/ecr05/MSM_HOCR/issues/5 >for some info from Emma. > &g

Re: [HCP-Users] MSM binaries versions

2019-04-04 Thread Moataz Assem
nconnectome.org" Subject: Re: [HCP-Users] MSM binaries versions Use version 3.0.0 in GitHub. The one used in FSL is not supported by the HCP Pipelines as it does not have the HOCR options. All that is needed is the MSM binary. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on

Re: [HCP-Users] MSM binaries versions

2019-04-04 Thread Harms, Michael
Timothy Coalson mailto:tsc...@mst.edu>> Date: Thursday, April 4, 2019 at 2:15 PM To: Moataz Assem mailto:moataz.as...@mrc-cbu.cam.ac.uk>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-User

Re: [HCP-Users] MSM binaries versions

2019-04-04 Thread Glasser, Matthew
te: Thursday, April 4, 2019 at 2:15 PM To: Moataz Assem mailto:moataz.as...@mrc-cbu.cam.ac.uk>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] MSM binaries versions The 1

Re: [HCP-Users] MSM binaries versions

2019-04-04 Thread Timothy Coalson
The 1.0 and 3.0 versions on github are nearly identical, that was just a naming issue. The version in FSL may be based on version 2, and is missing a library needed for HOCR, so some options in v3 aren't available. You should be able to use the fsl versions of the executables other than msm (so,

[HCP-Users] MSM binaries versions

2019-04-04 Thread Moataz Assem
Hi, What is the recommended version of the MSM binaries to use? The rep directory (https://github.com/ecr05/MSM_HOCR/releases) has v1.0.0 and v3.0.0 and I was previously using v2 from here: https://www.doc.ic.ac.uk/~ecr05/MSM_HOCR_v2/ Also what is the difference between these binaries and the