Re: [HCP-Users] Some questions about the HCP structural processing pipeline

2019-04-10 Thread Aaron C
were actually not used in the FreeSurfer pipeline? Thank you. Aaron From: Glasser, Matthew Sent: Monday, April 8, 2019 10:50 PM To: Aaron C; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Some questions about the HCP structural processing pipeline The brain ma

Re: [HCP-Users] Some questions about the HCP structural processing pipeline

2019-04-09 Thread Timothy Coalson
; To: Matt Glasser , "hcp-users@humanconnectome.org" < > hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] Some questions about the HCP structural > processing pipeline > > Hi Matt, > > I called the FreeSurfer pipeline using the script > "FreeSurf

Re: [HCP-Users] Some questions about the HCP structural processing pipeline

2019-04-09 Thread Glasser, Matthew
me.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Some questions about the HCP structural processing pipeline Hi Matt, I called the FreeSurfer pipeline using the script "FreeSurferPipelineBatch.sh" in the "Examples" folder. Do y

Re: [HCP-Users] Some questions about the HCP structural processing pipeline

2019-04-08 Thread Glasser, Matthew
The brain masked file should not be used for surface estimation. How are you calling the FreeSurfer pipeline? Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Aaron C mailto:aaroncr...@outlook.com>> Date: Monday, April 8, 2019 at 9:41 PM To: