Re: [HCP-Users] Trying to read HCP_S500_R468_MIGPd4500ROW.dconn.nii

If you want to run wb_command (the command line program) from the terminal, you should execute the file “wb_command” contained in the distribution’s “bin_macosx64” directory (/workbench/bin_macosx64/wb_command). wb_command.app is an OS X Bundle (a directory that contains the program and

Re: [HCP-Users] Trying to read HCP_S500_R468_MIGPd4500ROW.dconn.nii

Hi, I'm trying to run wb_command.app on OSX 10.11.1 but the app doesn't respond or the terminal. I'm running on root:xnu-3247.10.11~1/RELEASE_X86_64 x86_64 Do I miss a first step? Thanks for the help David On Wed, Nov 25, 2015 at 12:00 AM, Timothy Coalson wrote: > This part of

Re: [HCP-Users] Trying to read HCP_S500_R468_MIGPd4500ROW.dconn.nii

This part of your call: , 'readdata', false); is telling ft_read_cifti to not load the data matrix, that is why it isn't there. If you are just as comfortable in C++, then yes, CiftiLib is likely the best solution, it is directly based on the code we use in connectome workbench for cifti files.

Re: [HCP-Users] Trying to read HCP_S500_R468_MIGPd4500ROW.dconn.nii

Hello, With fieldTrip reading using this line mycifti = ft_read_cifti( '/Users/David/Desktop/HumanConnectomeProject/HCP_S500_R468_rfMRI_MIGP_d4500ROW_zcorr/HCP_S500_R468_MIGPd4500ROW.dconn.nii', 'readdata', false); I get: dimond (pos_pos), hdr (1x1 struct), unit ('mm'), brain structure,

Re: [HCP-Users] Trying to read HCP_S500_R468_MIGPd4500ROW.dconn.nii

What CIFTI data are you trying to get into matlab? Peace, Matt. From: hcp-users-boun...@humanconnectome.org on behalf of David Dalmazzo Sent: Monday, November 23, 2015 11:18 AM To:

Re: [HCP-Users] Trying to read HCP_S500_R468_MIGPd4500ROW.dconn.nii

Hi Matt, This file is HCP_S500_R468_MIGPd4500ROW.dconn.nii (33GB). But right now it is working with the last updated version of fieldtrip. Thanks for the support anyway David On Mon, Nov 23, 2015 at 7:14 PM, Glasser, Matthew wrote: > What CIFTI data are you trying to get

Re: [HCP-Users] Trying to read HCP_S500_R468_MIGPd4500ROW.dconn.nii

To get a dconn loaded in matlab, you of course need to have a large amount of available memory. Freezing is what I would expect if you don't have enough memory, and start using a lot of swap space (some ways of loading might initially load it as double precision, and need twice the memory). As