Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Marta Moreno
..@fmrib.ox.ac.uk>>, HCP Users > mailto:hcp-users@humanconnectome.org>>, > Timothy Coalson mailto:tsc...@mst.edu>>, "Harwell, John" > mailto:jharw...@wustl.edu>> > Subject: Re: [HCP-Users] error running hcp_fix > > 94 # Set this to the loca

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Glasser, Matthew
lasser mailto:glass...@wustl.edu>> Cc: "st...@fmrib.ox.ac.uk<mailto:st...@fmrib.ox.ac.uk>" mailto:st...@fmrib.ox.ac.uk>>, HCP Users mailto:hcp-users@humanconnectome.org>>, Timothy Coalson mailto:tsc...@mst.edu>>, "Harwell, John" mailto:jharw...@wu

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Marta Moreno
.uk>" > mailto:st...@fmrib.ox.ac.uk>>, HCP Users > mailto:hcp-users@humanconnectome.org>>, > Timothy Coalson mailto:tsc...@mst.edu>>, "Harwell, John" > mailto:jharw...@wustl.edu>> > Subject: Re: [HCP-Users] error running hcp_fix >

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Glasser, Matthew
@fmrib.ox.ac.uk>>, HCP Users mailto:hcp-users@humanconnectome.org>>, Timothy Coalson mailto:tsc...@mst.edu>>, "Harwell, John" mailto:jharw...@wustl.edu>> Subject: Re: [HCP-Users] error running hcp_fix Dear Matt and all, R version 3.4. Matlab version 2017b. Workben

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Marta Moreno
...@icloud.com>> > Date: Sunday, May 27, 2018 at 3:22 PM > To: "st...@fmrib.ox.ac.uk <mailto:st...@fmrib.ox.ac.uk>" > mailto:st...@fmrib.ox.ac.uk>> > Cc: Matt Glasser mailto:glass...@wustl.edu>>, HCP Users > mailto:hcp-users@humanconnectome.org>&

Re: [HCP-Users] error running hcp_fix

2018-05-31 Thread Marta Moreno
>>> Calls: eval -> eval -> -> ctreefit >>> Execution halted >>> >>> Please advice on which R version should I have installed to make it to >>> work. I have downloaded software packages and installing them in R as root >>> as follow

Re: [HCP-Users] error running hcp_fix

2018-05-31 Thread Timothy Coalson
es and installing them in R as root >> as follow: >> > install.packages('/Users/alayar/Downloads/kernlab_0.9-24.tar', >> dependencies=TRUE) >> *Warning message:* >> *package ‘/Users/alayar/Downloads/kernlab_0.9-24.tar’ is not available >> (fo

Re: [HCP-Users] error running hcp_fix

2018-05-30 Thread Marta Moreno
rning message: >> package ‘/Users/alayar/Downloads/kernlab_0.9-24.tar’ is not available (for R >> version 3.3.3) >> >> Thanks! >> >> -L >> >>> On May 27, 2018, at 4:24 PM, Glasser, Matthew >> <mailto:glass...@wustl.edu>> wrote: >>

Re: [HCP-Users] error running hcp_fix

2018-05-27 Thread Marta Moreno
mpatibility, we would need to know what version of >> Workbench and matlab to debug this. >> >> Peace, >> >> Matt. >> >> From: Marta Moreno > <mailto:mmorenoort...@icloud.com>> >> Date: Sunday, May 27, 2018 at 3:22 PM >> To: &qu

Re: [HCP-Users] error running hcp_fix

2018-05-27 Thread Timothy Coalson
no relationship between R and Workbench (or R and matlab). As to > a Workbench/matlab incompatibility, we would need to know what version of > Workbench and matlab to debug this. > > Peace, > > Matt. > > From: Marta Moreno > Date: Sunday, May 27, 2018 at 3:22 PM > T

Re: [HCP-Users] error running hcp_fix

2018-05-27 Thread Marta Moreno
;mailto:st...@fmrib.ox.ac.uk>" > mailto:st...@fmrib.ox.ac.uk>> > Cc: Matt Glasser mailto:glass...@wustl.edu>>, HCP Users > mailto:hcp-users@humanconnectome.org>> > Subject: Re: [HCP-Users] error running hcp_fix > > Thanks, but with newer versions is not w

Re: [HCP-Users] error running hcp_fix

2018-05-27 Thread Glasser, Matthew
PM To: "st...@fmrib.ox.ac.uk<mailto:st...@fmrib.ox.ac.uk>" mailto:st...@fmrib.ox.ac.uk>> Cc: Matt Glasser mailto:glass...@wustl.edu>>, HCP Users mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] error running hcp_fix Thanks, but with newer versions

Re: [HCP-Users] error running hcp_fix

2018-05-27 Thread Marta Moreno
Thanks, but with newer versions is not working either because R software packages such as 'kernlab' version 0.9.24, 'party' version 1.0.25, 'e1071' version 1.6.7 or 'randomForest' version 4.6.12, are incompatible with R 3.3 or 3.5. At least based on my experience. So could you please let me kn

Re: [HCP-Users] error running hcp_fix

2018-05-27 Thread steve
Hi - we've seen this in the past with specific combinations of matlab version and workbench version. I'm not quite sure if the very latest versions of both have the issue or not. Cheers. > On 27 May 2018, at 02:32, Marta Moreno wrote: > > I found the following error, please advice: (before i

Re: [HCP-Users] error running hcp_fix

2018-05-26 Thread Marta Moreno
I found the following error, please advice: (before is giving me some warnings about different functions that has same name as a Matlab builtin, I have pasted the output from last warning and first error). Which are the files that needs to be included in ‘CIFTIMatlabReaderWriter’ for the setti

Re: [HCP-Users] error running hcp_fix

2018-05-26 Thread Marta Moreno
You were right, now the problem is gone but still cannot find my clean.dtseries Here is the output, I could not find any error in .ica folder: hcp_fix RS_fMRI_1.nii.gz 2000 processing FMRI file RS_fMRI_1 with highpass 2000 running highpass running MELODIC running FIX FIX Feature extraction for Mel

Re: [HCP-Users] error running hcp_fix

2018-05-26 Thread Glasser, Matthew
Perhaps you are running out of memory. Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Marta Moreno mailto:mmorenoort...@icloud.com>> Date: Saturday, May 26, 2018 at 1:50 PM To: HCP Users mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] error running