[HCP-Users] Physiological Signals,

2015-04-29 Thread Shadi, Kamal
Hi everybody, I am trying to remove physiological noise using RETROICOR and data provided on rfMRI_REST1_LR_Physio_log.txt files for each subject. According to HCP tutorial the second column in these files corresponds to cardiac signal(pulse oximetry). If I plot the column, simple visual

Re: [HCP-Users] MNI atlas registration in volume space for task fMRI grayordinates datasets?

2015-04-29 Thread J.A. Etzel
To summarize the thread and some off-list conversations for future readers, it is the case that the HCP pipelines normalize the task fMRI images to the MNI atlas in volume space. This part of the preprocessing pipeline is different from the procedure used in Anticevic et al. 2008

[HCP-Users] Netmats MegaTrawl Released

2015-04-29 Thread Jennifer Elam
News from the Human Connectome Project (HCP) April 29, 2015 We are pleased to announce the release of the Netmats MegaTrawl, a set of webpages inside ConnectomeDB that summarizes analyses of the relationships between imaging and non-imaging measures in the Human Connectome Project, using

Re: [HCP-Users] MNI atlas registration in volume space for task fMRI grayordinates datasets?

2015-04-29 Thread Glasser, Matthew
Thanks Jo for the summary. The important registration for cortical data is still on the surface like Anticevic et al and other surface-based studies. Currently it is folding-based, but will be based on areal features in the future. Peace, Matt. On 4/29/15, 2:50 PM, J.A. Etzel