Hi Janine,
The Yeo et al. 2011, 7 and 17 Resting state Network parcellations in CIFTI
format (in the RSN-networks.32k_fs_LR.dlabel.nii file) are available in the
Workbench v1.0 Tutorial dataset and in the Group Average (R440/U100) dataset
that are both available for download on the 500 Subjects Pr
Hi,
I was following the instructions on how to modify the task for a single
monitor and I believe I followed them all correctly but I am now getting an
error. It says that Left of "." must be an object, structure, dialog. The
line the error is referring to says ExperimenterWindow.ActiveState =
"Fe
Ah, of course!
That is:
wb_command -probtrackx-dot-convert fdt_matrix3.dot
test_dot_to_cifti.dconn.nii -col-surface L.STS.func.gii -row-cifti
91282_Greyordinates.dscalar.nii COLUMN -transpose
On Mon, Jul 20, 2015 at 5:54 PM, Glasser, Matthew
wrote:
> No I meant the dot convert.
>
> Matt.
>
>
Some of us don’t think that code should do that. You can manually remove the NaNs, or use alternative software (option B):
https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ
Peace,
Matt.
From: on behalf of Janine Bijsterbosch
No I meant the dot convert.
Matt.
From: Maarten Vaessen
Date: Monday, July 20, 2015 at 3:29 AM
To: Matt Glasser
Cc: "hcp-users@humanconnectome.org"
Subject: Re: [HCP-Users] tractography
The conversion was
Hi,
I was wondering if there are any cortical parcellations (such as those in
Freesurfer or Yeo et al, 2011) available in cifti format please?
Thanks!!
Best wishes,
Janine
-
Dr Janine Bijsterbosch
Postdoctoral Researcher
FMRIB Centre, University of Oxford
John Radcliffe Hospital
Oxford, U
Hi,
When I use ft_read_cifti to load the dense connectome I end up with 96854*96854
grayordinates and lots of NaN's. This appears to be because the centre of the
brain is included in the cortical surfaces, which I can remove manually to end
up with the expected 91282 grayordinates and no NaN's.
The conversion was done like this:
wb_command -gifti-label-to-roi
../../MNINonLinear/fsaverage_LR32k/102816.L.aparc.a2009s.32k_fs_LR.label.gii
L.STS.func.gii -name S_temporal_sup
surf2surf -i
../../MNINonLinear/fsaverage_LR32k/102816.L.white.32k_fs_LR.surf.gii -o
L.STS.fsl_MNI_new.asc --outputtyp