Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file

2015-09-03 Thread Glasser, Matthew
The subcortical parcels for the CIFTI standard grayordinates space came from the Conte69 atlas (the label in each voxel is the mode of the 69 labels from the individual FreeSurfer segmentations). Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Timothy Coalson m

Re: [HCP-Users] TOPUP options with HCP scripts - Phase Encoding and Voxel Size incompatibilty with EPI

2015-09-03 Thread Glasser, Matthew
Hi, I agree with what Mike has said here for the multiple resolutions. As for the differing phase encoding directions, you will need to skip lines 260-262 of TopupPreprocessingAll.sh. Then you will need to bring the TopupField.nii.gz, Magnitude.nii.gz, and Magnitude_brain.nii.gz files into the

Re: [HCP-Users] how confirming twins' zygosity?

2015-09-03 Thread Jennifer Elam
Hi Jo, The zygosity of each twin reported in ConnectomeDB is by self report via several questions in the phone screening interview prior to the subject visit. We have successfully done analyses with the MZ, DZ, and sibling family structure taken into account is it is reported in the DB. We may veri

[HCP-Users] how confirming twins' zygosity?

2015-09-03 Thread Jo Etzel
Has the zygosity of the twin pairs been confirmed in the currently-released (500-subject) database? If so, how? I understand that genetic information is being collected for later testing, but am wondering if restricted analyses have already been carried out to confirm the MZ and DZ (or other si