Re: [HCP-Users] cifti-create-dense-scalar file not found

Have you been editing the script or did one of us introduce a bug? Peace, Matt. From: "Mandelli, Maria Luisa" > Date: Thursday, July 6, 2017 at 1:19 PM To: Matt Glasser >,

Re: [HCP-Users] Diffusion Preprocessing Error/Bug

I've been using FSL 5.0.7. It sounds like I need to download 5.0.10. Thanks Michael Timothy Hendrickson Department of Psychiatry University of Minnesota Bioinformatics and Computational Biology M.S. Candidate Office: 612-624-6441 Mobile: 507-259-3434 (texts okay) On Thu, Jul 6, 2017 at 3:30 PM,

Re: [HCP-Users] Diffusion Preprocessing Error/Bug

Which version of FSL are you using? I believe that the eddy_unwarped_images.eddy_rotated_bvecs file will be created by the version of ‘eddy’ that comes with the newest FSL (5.0.10), but if you are using FSL 5.0.9, you needed to install the “eddy patch” to get that functionality. cheers, -MH

[HCP-Users] Diffusion Preprocessing Error/Bug

Hello, I am having trouble running the diffusion preprocessing. Once the processing gets to eddy_postproc.sh I get the following error: *awk: cmd. line:1: fatal: cannot open file `/home/lnpi15-raid3/cgilmore-data-lnpi15/272_CENC/49769/Diffusion/eddy/eddy_unwarped_images.eddy_rotated_bvecs*. The

Re: [HCP-Users] about brain region index on the surface

I would need more details about exactly what you did and what went wrong. Peace, Matt. From: > on behalf of 罗 <963619...@qq.com> Date: Thursday, July 6, 2017 at 8:10 AM To: hcp-users