Re: [HCP-Users] Pittsburgh Sleep Quality Index Component Scores

Hi Ely, The PSQI Component scores are already available in ConnectomeDB. We don't have plans to release the MMSE component scores. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660

[HCP-Users] HCP Young Adult Genetics Data Released on dbGaP!!

News from the Human Connectome Project (HCP) March 2, 2018 The Human Connectome Project (HCP) WU-Minn consortium is pleased to announce the release of all SNP Genotypes collected for HCP-Young Adult (HCP-YA) subjects on dbGaP: Mapping the Human Connectome - Structure, Function, and

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

Well, I guess that would be us every time we update our local installation. We’ll let you know how it goes gaurav patel gauravpa...@gmail.com pateldsclab.net > On Mar 2, 2018, at 2:30 PM, Glasser, Matthew wrote: > > Hi Gaurav, > > I guess they

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

Hi Gaurav, I guess they are supported on mac for now, but I don¹t know that anyone is actively testing them for macŠ Matt. On 3/2/18, 1:28 PM, "Gaurav Patel" wrote: >YesŠwe¹ve been 3.4 for many years without problems, and 3.22 only

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

Yes…we’ve been 3.4 for many years without problems, and 3.22 only required those minor changes. We recently verified that it was easy to install and run on macs when we expanded the network of mac pros we use to run the HCP pipelines gaurav patel gauravpa...@gmail.com

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

They do! From: Glasser, Matthew Sent: Friday, March 2, 2018 2:25:47 PM To: Sanchez, Juan (NYSPI); hcp-users@humanconnectome.org Subject: Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2 ATTENTION: This email came from an external source. Do

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

So you are saying that the Pipelines work fine on the Mac for you aside from this cp issue? Matt. From: > on behalf of "Sanchez, Juan (NYSPI)"

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

Dear Kwan-Jin Jung I had rthe same problems when I installed the 3_22 HCP Pipleines Here is what we did: 1. syntax in scripts: Just remove the "--preserve=timestamps" from all of the Pipeline scripts 2. workbench: Get the "dev_latest" zip file that says "mac64" from here:

Re: [HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

Google finds this: https://www.mail-archive.com/hcp-users@humanconnectome.org/msg01081.html Matt. On 3/2/18, 1:06 PM, "Kwan-Jin Jung" wrote: >Hi Matthew, > >Thank you. >It is a long list: >linux-vdso.so.1 => (0x7ffece4f) >libz.so.1 =>

Re: [HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

Hi Matthew, Thank you. It is a long list: linux-vdso.so.1 => (0x7ffece4f) libz.so.1 => /usr/local/lib/libz.so.1 (0x7fafe4dd9000) libcrypt.so.1 => /lib/x86_64-linux-gnu/libcrypt.so.1 (0x7fafe4ba1000) libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2

Re: [HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

Well you will actually have to run the command on the file to get a meaningful output. Sometimes FreeSurfer has shell wrappers for binaries, so you’ll need to be sure that isn’t the case for mris_make_surfaces, but I don’t think it is. Peace, Matt. On 3/2/18, 12:58 PM, "Kwan-Jin Jung"

Re: [HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

Hi Matthew, jung@FileServer:~/bin/HCP/Examples/Scripts$ ldd mris_make_surfaces ldd: ./mris_make_surfaces: No such file or directory Kwan-Jin Jung, Ph.D. S230J, HMRC, Life Science Laboratories UMASS Amherst Office: 413-577-0538 Website: http://www.umass.edu/ials/hmrc -Original

Re: [HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

On Ubuntu 14.04 what happens if you do ldd mris_make_surfaces? Peace, Matt. On 3/2/18, 12:41 PM, "Kwan-Jin Jung" wrote: >Hi Matthew, > >Since the FreeSurfer HCP version is available for MacOS, I assumed that >the HCP pipeline is supported in MacOS. > >The problems with

Re: [HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

Hi Matthew, Since the FreeSurfer HCP version is available for MacOS, I assumed that the HCP pipeline is supported in MacOS. The problems with Ubuntu (both 16.04 and 14.04) were about the missing libraries during mris: Libnetcdf.so.6 error during mris_make_surfaces. This was resolved by

Re: [HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

I¹m not sure we support the HCP Pipelines on Mac OS X. You definitely need to be using a bash interpreter. What issues were you having on Ubuntu? Peace, Matt. On 3/2/18, 10:13 AM, "hcp-users-boun...@humanconnectome.org on behalf of Kwan-Jin Jung"

[HCP-Users] Change of FreeSurferHiresPial.sh for MacBook IOS

Hi, After I failed to run FreeSurfer pipeline on both Ubuntu and Centos, I tried it on MacBook. It runs without library issues, but it seems to have differences in shell scripting commands. The first example is ‘cp’ which needs to be replaced into ‘rsync’ in both FreeSurferHiresWhite.sh and

Re: [HCP-Users] Split dtseries

wb_command -cifti-merge contains this functionality, rather than a separate command. Peace, Matt. On 3/2/18, 6:47 AM, "hcp-users-boun...@humanconnectome.org on behalf of A R" wrote: >Dear HCP users, > >How to split/trim a

[HCP-Users] Split dtseries

Dear HCP users, How to split/trim a dtseries or ptseries file by number of time points? Basically an equivalent of fslroi... Thanks for any info ___ HCP-Users mailing list HCP-Users@humanconnectome.org

Re: [HCP-Users] Correct interpretation of NIH battery test 'Words-in-Noise' in HCP subjects

Hi, Jennifer, That's great, thanks for the clarification! Best, Robert Am 01/03/2018 um 18:26 schrieb Elam, Jennifer: Hi Robert, Thank you for pointing us to this problem. The HCP Words in Noise score is indeed the NIH Toolbox Words in Noise (WIN) Test computed score, rather than the