Re: [HCP-Users] DICOM to NIFTI in HCP standard

2018-08-16 Thread Yaroslav Halchenko
On Thu, 16 Aug 2018, Harms, Michael wrote: >Sorry, but not to my knowledge. We use ‘dcm2niix’ currently for DICOM to >NIFTI conversion (‘dcm2niix’ generates nice .json files containing a bunch >of relevant parameters of the scan). That particular step is pretty >straightforward.

Re: [HCP-Users] Documentation HCP genetic data

2018-08-16 Thread Elam, Jennifer
We have replied to Yann off list, but for the benefit of others on the list who are interested in the HCP genetic data: If you have questions about the HCP dbGaP data, please send them to dbgap-h...@ncbi.nlm.nih.gov – it’s a central collection place from

Re: [HCP-Users] DICOM to NIFTI in HCP standard

2018-08-16 Thread Harms, Michael
Hi, Sorry, but not to my knowledge. We use ‘dcm2niix’ currently for DICOM to NIFTI conversion (‘dcm2niix’ generates nice .json files containing a bunch of relevant parameters of the scan). That particular step is pretty straightforward. Then, as part of our “session building” process, we

[HCP-Users] DICOM to NIFTI in HCP standard

2018-08-16 Thread Shachar Gal
Hello, Upon starting to analyse our data, which was acquired with an HCP-like protocol, with the HCP pipelines, we were wondering if there is an available script or tool that converts DICOM to NIFTI in the HCP dir structure. Hope to hear from you. Shachar Gal, Tel Aviv University