Re: [HCP-Users] Raw EPI data in the k-space

No. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Gengyan Zhao mailto:gzha...@wisc.edu>> Date: Friday, September 7, 2018 at 10:40 AM To: "hcp-users@humanconnectome.org" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] R

[HCP-Users] Raw EPI data in the k-space

Hello HCP masters, Does the HCP share the raw EPI data in the k-space before reconstruction. I want to try some recon methods on them. Thanks. Best, Gengyan ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/m

Re: [HCP-Users] HCP Development - DTI protocol

Hi Reut, HCP Development uses a protocol based on the CCF Protocol template, which is available as a zip download of electronic protocols for import into a Siemens 3T Prisma for all MR modalities used, including dMRI: http://protocols.humanconnectome.org/CCF/ Best, Jenn Jennifer Elam, Ph.D.

[HCP-Users] HCP Development - DTI protocol

My name is Reut and I'm starting my PhD in Tel Aviv university in collaboration with Sheba medical center in Israel, on the subject of pediatric brain injury. We are planning to begin scanning children in this study within the next few weeks. We are interested to run a very similar imaging protocol

Re: [HCP-Users] making a chart/graph out of myelin maps

Hi, You can use -cifti-parcellate with, e.g., the Glasser parcellation. Cheers, -MH -- Michael Harms, Ph.D. --- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid A

[HCP-Users] making a chart/graph out of myelin maps

Dear HCP experts, after obtaining myelin maps for the participants in my sample, I was wondering if there's an easy way to turn the visual information that we see when we overlay the maps on a surface, into numerical information? For instance, having the average myelin value per region for each par

Re: [HCP-Users] wb_command failed to convert text to number

Matt and Tim, Thank you for your prompt responses. Tim, I agree, I think a VERY LOUD WARNING OR ERROR would be in order for altering the data in a cifti convert from text with this oversized problem. Thank you for making a dev version for testing. Matt, You are totally right, these numbers

Re: [HCP-Users] Bias Field setting in Resting State Stats script

Okay great, that was my understanding. Just wanted to make sure I wasn't missing something. Thanks! Andrew On Thu, Sep 6, 2018 at 9:54 AM Glasser, Matthew wrote: > In that case I believe you want “NONE” because you don’t need to mess with > it—it was already done correctly. > > Matt. > > From

Re: [HCP-Users] Bias Field setting in Resting State Stats script

In that case I believe you want “NONE” because you don’t need to mess with it—it was already done correctly. Matt. From: Andrew Poppe mailto:poppe...@gmail.com>> Date: Thursday, September 6, 2018 at 9:49 PM To: Matt Glasser mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org

Re: [HCP-Users] Bias Field setting in Resting State Stats script

We used "SEBASED" for the bias correction setting in the fmri volume step. Andrew On Tue, Sep 4, 2018 at 5:40 PM Glasser, Matthew wrote: > What setting did you use in fMRIVolume? > > Matt. > > From: on behalf of Andrew Poppe < > poppe...@gmail.com> > Date: Wednesday, September 5, 2018 at 4:35