Oh yes definitely not. I also upgraded my R packages.
Kind regards,
Dinal Jayasekera
PhD Candidate | InSITE Fellow
Ammar Hawasli Lab
Department of Biomedical Engineering | Washington University in St. Louis
From: Glasser, Matthew
Sent: Thursday, November 1, 2018
That doesn’t discount Mike’s advice on needing to sort out R packages.
Matt.
From: "Jayasekera, Dinal"
mailto:dinal.jayasek...@wustl.edu>>
Date: Thursday, November 1, 2018 at 8:32 PM
To: Matt Glasser mailto:glass...@wustl.edu>>, "Harms,
Michael" mailto:mha...@wustl.edu>>,
"hcp-users@humanconne
Matt,
I will update my version of sICA+FIX as well and upgrade to FSL 6.0 and let you
know how things change.
Kind regards,
Dinal Jayasekera
PhD Candidate | InSITE Fellow
Ammar Hawasli Lab
Department of Biomedical Engineering | Washington University in St. Louis
_
Hi Dinal,
Also make sure you have the absolutely latest version of sICA+FIX, as there
were recent changes and upgrade to FSL 6.0. Finally, we are testing some
updates to hcp_multi_run_fix that you will need to be using for your project,
and we can let you know when that is available. For your
Hi,
Have you configured your R installation correctly, per the FSL FIX Wiki page?
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX/UserGuide
cheers,
-MH
--
Michael Harms, Ph.D.
---
Associate Professor of Psychiatry
Washington University School o
Dear HCP community,
I am currently running the IcaFixProcessingBatch script on the data processing
using the minimal functional pipelines. However, for each of my resting state
conditions, I get the following error:
/home/Desktop/Applications/fix1.066/fix: 252:
/home/Desktop/Applications/fix
Correction. The latest FSL is now v6.0, which just got released the other day!
Feel free to give that a try, and report back if there are any aspects of the
HCPpipelines that don’t work in the context of using FSL 6.0.
Cheers,
-MH
--
Michael Harms, Ph.D.
--
FS: 5.3.0-HCP. We are working toward compatibility with FS 6.x – hopefully in
the not too distant future.
FSL: latest (5.0.11 currently)
Workbench: latest (1.3.2 currently)
We know that the following is way out of date, and needs to be updated:
https://github.com/Washington-University/HCPpipeli
Dear HCP experts,
Would you please suggest FreeSurfer, FSL, and Connectome Workbench version for
using HCP Pipeline v 3.27.0? Thank you.
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