Hello Matt,
Thanks for the response. Taylor Salo (CC’d) forked it from the Wash U version
to make it more Python 3 compatible and to fix a couple of bugs (see
https://github.com/FIU-Neuro/gradunwarp/pull/1). However, we are still
encountering this same issue. Hopefully it is an easy fix!
.fix.log says that the specified path for the cifti matlab functions is
wrong (nonexistent directory).
Tim
On Fri, Nov 16, 2018 at 2:58 PM Jayasekera, Dinal <
dinal.jayasek...@wustl.edu> wrote:
> Tim,
>
>
> I implemented your version of hcp_fix that you sent but I continue to get
> the same
Tim,
I implemented your version of hcp_fix that you sent but I continue to get the
same error about missing files:
rfMRI_REST1_PA_hp2000.ica/reg:
total 1492
drwxrwxr-x 2 functionalspinelab functionalspinelab4096 Nov 16 13:21 .
drwxrwxr-x 6 functionalspinelab functionalspinelab4096 Nov
The easiest to use (especially if your goal is to match other cifti files)
is generally -cifti-create-dense-from-template. It will even turn a 59k
surface-only cifti into a standard 91282 cifti (or vice versa, if you are
so inclined).
Yes, -cifti-export-dense-mapping will give you the cifti
The purpose of the surface ROIs in -cifti-create-label is to prevent the
cifti file from needing to represent data inside the medial wall (where it
would generally be nonsensical). Since you haven't converted the data to
any kind of label format yet, it is not the command you want - putting the
See the various -cifti-create-* commands.
--
Michael Harms, Ph.D.
---
Associate Professor of Psychiatry
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel:
Is there a command to convert LH (or RH) gifti file to hcp cifti file?
On Fri, Nov 16, 2018 at 10:55 PM Harms, Michael wrote:
>
>
> No, it is more complicated than that.
>
>
>
> I believe what you need is -cifti-export-dense-mapping
>
>
>
> Cheers,
>
> -MH
>
>
>
> --
>
> Michael Harms, Ph.D.
>
No, it is more complicated than that.
I believe what you need is -cifti-export-dense-mapping
Cheers,
-MH
--
Michael Harms, Ph.D.
---
Associate Professor of Psychiatry
Washington University School of Medicine
Department of Psychiatry, Box
Thanks! Can I simply say that:
For left hemisphere:
vertex number in cifti = vertex number (up to 29706) in LH gifti
For right hemisphere:
vertex number in cifti = vertex number (up to 29706) in RH gifti + 29706
Or the mapping is more complicated than this?
On Fri, Nov 16, 2018 at 9:56 PM
The Minnesota Center for Twin and Family Research (MCTFR) seeks to hire a
“Post-Doctoral Associate” (9742R5: Researcher 5) interested in identifying
deviations in brain structure and white matter organization associated with
problematic alcohol use. As part of a two-year project funded by the
To Whom It May Concern,
I apologise in advance since this is probably a trivial question, but I tried
browsing the list and couldn’t find a clear answer. I would like to obtain a
binary dlabel for a surface. The overarching goal is to create a network mask
converting it from some volumetric
That is correct, the medial wall is kept out. Usually when I want to do that I
split the CIFTI file into hemispheric GIFTI files, but perhaps there is a good
way to load in a specific mapping based on something we can output from
wb_command.
Matt.
From:
Hi,
A cifti file has 91282 vertices/voxels, a combined LR cifti file has 59412
vertices, and an individual hemisphere gifti file has 32492 vertices. So
the number of cortical vertices in cifti files is less than the number of
cortical vertices in gifti files (left hemi vertices + right hemi
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