Re: [HCP-Users] An error about subcortical processinginHCPfMRI-surface pipeline

Hi Matt, Sorry to bother you again. Followed your recommend, I have checked the header of those two error image. I found that the space dimension of FunTask_AP.nii.gz is 91X108X91 while it is 91X109X91 of that in ROIs.2.nii.gz. Then I had compared this parameter to our other dataset

Re: [HCP-Users] Some questions about the HCP structural processing pipeline

To add some context, the _acpc_dc_restore_brain versions of the files are *outputs* of the structural pipelines. We do not run freesurfer on masked T1w images. Matt is asking for the exact arguments you provided to FreeSurferPipeline.sh, by providing the full command line that was run that

Re: [HCP-Users] Some questions about the HCP structural processing pipeline

How did YOU call the FreeSurfer Pipeline in your subject with an issue? Matt. From: Aaron C mailto:aaroncr...@outlook.com>> Date: Tuesday, April 9, 2019 at 8:42 AM To: Matt Glasser mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org"