The main current limitation with the probabilistic trajectory feature (which
tracks exactly which fiber is chosen by the tractography algorithm out of the
1-3 modeled fibers in each voxel) is that it only works with single threaded
probtrackx2, and not with the GPU accelerated version.
Matt.
Connectome workbench is agnostic to species, though there are some defaults
(identification symbol size) which default to a size suited to the human
brain. We frequently use it with primate data.
Workbench can display probabilistic trajectories generated with fsl's
bedpostx/probtrackx tools (for
1) Connectome Workbench is routinely used to analyze NHP neuroimaging data
(macaque, chimpanzee, marmoset) in a number of labs, and a growing number of
datasets are available in BALSA. See, for example:
Autio et al. (2019) https://www.biorxiv.org/content/10.1101/602979v1
Hi! I've started to work with the human connectome workbench, and I was
wondering if is ready to use with monkeys as well, like Caret.
And I also read in the tutorial that you are already working in a new feature:
probabilistic fiber trajectories... how soon it will come?? :D
Thank you very
Hi Matt,
Your advice works! After I had switched the FSL version to 6.0.1,
T1_store.2.nii.gz and the other files in resampling directory were generated in
the right FOVs (91x109x91). So, maybe the FSL lower than 6.0.1 is not fitted to
the pipeline 4.0.0.
Thanks for helping me all the time.
Dear Jennifer,
one of our students has some more detailed questions about the
Words-in-noise test used in the HCP data set. There were some issues for
him in getting accepted to the mailing list, so here I forward you his
email - thanks in advance!
--
Dear Dr. Elam,
Thank
