Re: [HCP-Users] ICA FIX output missing

2019-02-28 Thread Glasser, Matthew
, Matt Glasser mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] ICA FIX output missing Dear Tim, True, it had not been added to the path. Now I added

Re: [HCP-Users] ICA FIX output missing

2019-02-28 Thread Leonardo Tozzi
lto...@stanford.edu<mailto:lto...@stanford.edu> | (650) 5615738 From: Timothy Coalson Date: Tuesday, February 26, 2019 at 4:38 PM To: Leonardo Tozzi Cc: "Harms, Michael" , "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] ICA FI

Re: [HCP-Users] ICA FIX output missing

2019-02-26 Thread Glasser, Matthew
mailto:tsc...@mst.edu>>, Leonardo Tozzi mailto:lto...@stanford.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] ICA FIX output missing a) It may give the same

Re: [HCP-Users] ICA FIX output missing

2019-02-26 Thread Harms, Michael
Email: mha...@wustl.edu From: "Glasser, Matthew" Date: Tuesday, February 26, 2019 at 8:19 PM To: NEUROSCIENCE tim , Leonardo Tozzi Cc: "Harms, Michael" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] ICA FIX output missing Regarding task analysis, I do

Re: [HCP-Users] ICA FIX output missing

2019-02-26 Thread Glasser, Matthew
rs@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] ICA FIX output missing That is saying that you don't have the matlab gifti library installed (or it isn't on your matlab path). Tim On Tue, Feb 26, 2019 a

Re: [HCP-Users] ICA FIX output missing

2019-02-26 Thread Timothy Coalson
Tozzi, MD, PhD > > Williams PanLab | Postdoctoral Fellow > > Stanford University | 401 Quarry Rd > > lto...@stanford.edu | (650) 5615738 > > > > > > *From: *"Harms, Michael" > *Date: *Tuesday, February 26, 2019 at 7:37 AM > *To: *"Glasser, Ma

Re: [HCP-Users] ICA FIX output missing

2019-02-26 Thread Leonardo Tozzi
University | 401 Quarry Rd lto...@stanford.edu<mailto:lto...@stanford.edu> | (650) 5615738 From: "Harms, Michael" Date: Tuesday, February 26, 2019 at 7:37 AM To: "Glasser, Matthew" , Leonardo Tozzi , "hcp-users@humanconnectome.org" Cc: "Burgess, Gregory" Subj

Re: [HCP-Users] ICA FIX output missing

2019-02-26 Thread Harms, Michael
.edu From: "Glasser, Matthew" Date: Monday, February 25, 2019 at 6:53 PM To: Leonardo Tozzi , "Harms, Michael" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] ICA FIX output missing You’ll want to be using wb_command 1.3.2. I am not aware of any modificatio

Re: [HCP-Users] ICA FIX output missing

2019-02-25 Thread Glasser, Matthew
to:lto...@stanford.edu>> Date: Monday, February 25, 2019 at 5:09 PM To: "Harms, Michael" mailto:mha...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] IC

Re: [HCP-Users] ICA FIX output missing

2019-02-25 Thread Leonardo Tozzi
ary 25, 2019 at 9:59 AM To: Leonardo Tozzi , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] ICA FIX output missing Hi, The log files for ICA FIX are a bit scattered. In the .ica directory check: .fix_2b_predict.log (from the prediction – i.e,. R code) and .fix.log (from the

Re: [HCP-Users] ICA FIX output missing

2019-02-25 Thread Harms, Michael
users@humanconnectome.org" Subject: [HCP-Users] ICA FIX output missing Dear Experts, I have been trying to use ICA FIX to denoise task data of a large number of subjects from the HYA release. I have managed to make it run with no errors on our local HPC cluster, but I still have one problem. In the vas

[HCP-Users] ICA FIX output missing

2019-02-25 Thread Leonardo Tozzi
Dear Experts, I have been trying to use ICA FIX to denoise task data of a large number of subjects from the HYA release. I have managed to make it run with no errors on our local HPC cluster, but I still have one problem. In the vast majority of subjects, even if FIX works and produces a file