Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-10 Thread Caio Seguin
*Sent:* Friday, February 8, 2019 10:29:45 AM > *To:* NEUROSCIENCE tim > *Cc:* Caio Seguin; Elam, Jennifer; hcp-users > *Subject:* Re: [HCP-Users] Sharing HCP-derived brain networks and > graph-theoric measures > > The "Upload Files" button on the Files moda

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-08 Thread Elam, Jennifer
Caio Seguin; Elam, Jennifer; hcp-users Subject: Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures The "Upload Files" button on the Files modal should take you to a page with a widget that allows you to upload arbitrary files to your BALSA study. It is as

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-08 Thread John Smith
The "Upload Files" button on the Files modal should take you to a page with a widget that allows you to upload arbitrary files to your BALSA study. It is assumed that extra files are there to serve as documentation or additional figures, so currently the uploader accepts files with the following

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Glasser, Matthew
gt;> Date: Thursday, February 7, 2019 at 5:24 PM To: "Harms, Michael" mailto:mha...@wustl.edu>> Cc: Caio Seguin mailto:caioseg...@gmail.com>>, hcp-users mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theor

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Timothy Coalson
Email: mha...@wustl.edu >> >> >> >> *From: * on behalf of Caio Seguin >> >> *Date: *Thursday, February 7, 2019 at 4:52 PM >> *To: *NEUROSCIENCE tim >> *Cc: *hcp-users >> *Subject: *Re: [HCP-Users] Sharing HCP-de

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Timothy Coalson
*Thursday, February 7, 2019 at 4:52 PM > *To: *NEUROSCIENCE tim > *Cc: *hcp-users > *Subject: *Re: [HCP-Users] Sharing HCP-derived brain networks and > graph-theoric measures > > > > Thanks Tim and Matt for the quick reply. > > > > Most of the files are NxN

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Timothy Coalson
As I recall, BALSA also allows arbitrary additional files to be uploaded to studies. I'm not sure about the details of how to do this, though (there is an "upload files" button in the "files" modal for a study you own, but I'm not sure where those files end up). Tim On Thu, Feb 7, 2019 at 4:52

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Harms, Michael
...@wustl.edu From: on behalf of Caio Seguin Date: Thursday, February 7, 2019 at 4:52 PM To: NEUROSCIENCE tim Cc: hcp-users Subject: Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures Thanks Tim and Matt for the quick reply. Most of the files are NxN connectivity matrices

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Caio Seguin
Thanks Tim and Matt for the quick reply. Most of the files are NxN connectivity matrices, where N could denote, for instance, ROIs from different parcellation schemes or resting-state functional networks. Ok, so one option is to transform these matrices into cifti files and share them through

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Timothy Coalson
If your data is organized as a value per parcel/network, you should be able to turn it into parcellated cifti files, which can be displayed in wb_view (and therefore in scenes) as a matrix and/or as colored regions on the surfaces and in the volume. See wb_command -cifti-parcellate (to make a

Re: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Glasser, Matthew
me.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures Dear experts, I have used diffusion and resting-state functional MRI data from the HCP to derive whole brain connectomes for individual participants. I

[HCP-Users] Sharing HCP-derived brain networks and graph-theoric measures

2019-02-07 Thread Caio Seguin
Dear experts, I have used diffusion and resting-state functional MRI data from the HCP to derive whole brain connectomes for individual participants. I used the connectomes to computed graph-theoretic measures that are part of a manuscript I am working on. My question concerns the sharing of