Re: [HCP-Users] Offline vs. online gradient nonlinearity correction

That all make sense -- thanks a lot, Matt. We will use the applywarp output. Concatenation of tarnsforms is also something we do. Sandy On Mon, Aug 7, 2017 at 6:11 PM Glasser, Matthew wrote: > Hi Sandhitsu, > >1. You could take a difference between the two images to see if >anything bey

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

Dear Tim and Matt, Thank you very much for your help, now it works! I had my clusters registered to the S900_Average_T1w_restore.nii file, but they had to be registered to the MNI152_T1_2mm.nii.gz file. Thank you very much, Xavier. From: Timothy Coalson [tsc...@ms

[HCP-Users] The best set of annotations for any MRI scan?

Hi, I am looking for the most complete set of annotations for a scan, which file should I pull? Thank you in advance, anita -- All key biological entities deserve an #RRID! orcid.org/-0002-5497-0243 ___ HCP-Users mailing list HCP-Users@humanconnect

Re: [HCP-Users] The best set of annotations for any MRI scan?

I don’t know what you mean by annotations or what scan you are referring to? Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of anita bandrowski mailto:band...@gmail.com>> Date: Thursday, August 10, 2017 at 11:33 AM To: "hcp-users@humanconnectome.org

Re: [HCP-Users] The best set of annotations for any MRI scan?

Like I said, I would really need to know more about what you are trying to do. Peace, Matt. From: anita bandrowski mailto:band...@gmail.com>> Date: Thursday, August 10, 2017 at 12:48 PM To: Matt Glasser mailto:glass...@wustl.edu>> Subject: Re: [HCP-Users] The best set of annotations for any MRI

Re: [HCP-Users] aspera dowload trouble

Elam, thanks very much for the info. I haven't had time to try this, and the user looking for the data has indeed downloaded it in the meantime while on another network. But I'll keep this info for next time. Is there an scp/sftp/rsync route to the data sets? I have a machine on a different netwo

Re: [HCP-Users] aspera dowload trouble

Hi Michael, You can access the data via REST calls-- take a look at: https://wiki.humanconnectome.org/display/PublicData/How+To+Access+Subject+Data+via+REST You can also access the data on AWS-- more info on that here: https://wiki.humanconnectome.org/display/PublicData/How+To+Connect+to+Connec

Re: [HCP-Users] The best set of annotations for any MRI scan?

I’m not aware of a public dataset like this, but perhaps someone else on the list is. Peace, Matt. From: anita bandrowski mailto:band...@gmail.com>> Date: Thursday, August 10, 2017 at 1:35 PM To: Matt Glasser mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org

[HCP-Users] DTI on HCP data

​Dear HCP Team, I would like to use HCP diffusion data to do some diffusion tensor fitting and subsequently calculate maps of FA, MD, etc. For this I think it would be handy to use the followings: $subject\T1w\Diffusion\bvals $subject\T1w\Diffusion\bvecs $subject\T1w\Diffusion\data.nii.gz We can

Re: [HCP-Users] DTI on HCP data

It looks like you have the correct understanding of this. One cannot easily apply the gradient nonlinearity effects on the diffusion gradients to the images, as really you need to apply them to the bvals and bvecs. Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf