[HCP-Users] group comparison in myelin maps

2017-12-14 Thread Gilman, Jodi
I’m trying to compare 2 groups to see if there are differences in myelination. Here are the steps that seem logical to me, would be great to see if I’m going about this correctly: 1. Create a merged file of the MSMAll .dscalar maps for each group separately (using wb_shortcuts

[HCP-Users] Best structural image for VBM?

2017-12-15 Thread Gilman, Jodi
Hello, I am interested in doing a VBM analysis- which structural images would be best for this? I am currently using 3T_T1w_MPR1.nii.gz, which look very good. But I’d like to confirm that these are best. Thanks, Jodi The information in this e-mail is intended only for the person to whom

[HCP-Users] Behavior data

2018-02-09 Thread Gilman, Jodi
Is there a list of references for all of the behavioral measures collected? I am trying to track them down but it is a lot of work. If these were all in one place, that would be so amazing… Thanks, Jodi Jodi Gilman, Ph.D. Assistant Professor, Harvard Medical School Center for Addiction

Re: [HCP-Users] Behavior data

2018-02-10 Thread Gilman, Jodi
du> www.humanconnectome.org<http://www.humanconnectome.org/> From: hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org> <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>>

[HCP-Users] NIH toolbox measures

2018-02-22 Thread Gilman, Jodi
Hi Jenn, I have a question about the scores from NIH toolbox on the domains of negative affect, psychological well-being, social relationships, and stress and self-efficacy. I see that the scores available for download are all unadjusted; I do not see a column for any adjusted scores on these

Re: [HCP-Users] group comparison in myelin maps

2017-12-22 Thread Gilman, Jodi
Center for Addiction Medicine Massachusetts General Hospital 101 Merrimac St. Boston, MA 02114 Tel.:617-643-7293 Fax:617-643-1998 On Dec 14, 2017, at 1:14 PM, Gilman, Jodi <jgilm...@mgh.harvard.edu<mailto:jgilm...@mgh.harvard.edu>> wrote: Thank you, Matt. Do you have an example

[HCP-Users] PALM Viewing results

2018-03-16 Thread Gilman, Jodi
Hi, In documentation for randomise, when viewing the 1-p results in FSLView the min/max display range should be set to 0.95/1.0 so that values less than 0.95 (equivalent to p>0.05) are not shown. If these are corrected values (i.e. corrp) then the visible areas correspond to the statistically

Re: [HCP-Users] PALM Viewing results

2018-03-16 Thread Gilman, Jodi
an underlay through non-significant regions (T1w and/or sulc as a reference of the anatomical locations, or maybe the HCP MMP v1.0 or its borders as a reference of the functional locations). Tim On Fri, Mar 16, 2018 at 9:45 AM, Gilman, Jodi <jgilm...@mgh.harvard.edu<mailto:jgilm...@mgh.harva

[HCP-Users] Restricted access

2018-10-09 Thread Gilman, Jodi
Hello, I applied for (and was granted) access to the restricted HCP database; however, when I log onto https://db.humanconnectome.org/data/projects/HCP_1200 I no longer see an option to download the restricted data. Please help! Best, Jodi Jodi Gilman, Ph.D. Associate Professor, Harvard