Re: [HCP-Users] Extraction of mean myelination values from a custom roi

2017-10-26 Thread Lisa Kramarenko
might only be using the first ROI. Tim will know better what is the >>>> issue. You might try converting the ROIs to a parcellation and then >>>> parcellating the myelin map and converting the parcellated file to text or >>>> whatever you need. >>>

Re: [HCP-Users] Extraction of mean myelination values from a custom roi

2017-10-20 Thread Timothy Coalson
>> >>> Matt. >>> >>> From: <hcp-users-boun...@humanconnectome.org> on behalf of Lisa >>> Kramarenko <lisa.kramare...@gmail.com> >>> Date: Tuesday, October 17, 2017 at 7:11 AM >>> To: "hcp-users@humanconnectome.o

Re: [HCP-Users] Extraction of mean myelination values from a custom roi

2017-10-19 Thread Lisa Kramarenko
gmail.com> >> Date: Tuesday, October 17, 2017 at 7:11 AM >> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: [HCP-Users] Extraction of mean myelination values from a custom >> roi >> >> Dear experts, >> >

Re: [HCP-Users] Extraction of mean myelination values from a custom roi

2017-10-17 Thread Timothy Coalson
Tuesday, October 17, 2017 at 7:11 AM > To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: [HCP-Users] Extraction of mean myelination values from a custom > roi > > Dear experts, > > I have a question about extracting average myeli

Re: [HCP-Users] Extraction of mean myelination values from a custom roi

2017-10-17 Thread Glasser, Matthew
lt;hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Extraction of mean myelination values from a custom roi Dear experts, I have a question about extracting average myelination value from a custom roi. What I did was the following: wb_comman

[HCP-Users] Extraction of mean myelination values from a custom roi

2017-10-17 Thread Lisa Kramarenko
Dear experts, I have a question about extracting average myelination value from a custom roi. What I did was the following: wb_command -cifti-stats merged_myelin_maps_group1.dscalar.nii -reduce -MEAN -roi file_with_significant_differences_between_the_groups_thresholded_at_1.3.dscalar.nii I get