Hmmm. What is the specific error message that you are getting? In the 4.0.0
pipelines, the necessary custom scripts that you mentioned are provided with
the pipeline distribution, and are contained in the
HCPpipelines/FreeSurfer/custom directory.
It sounds like you don’t have something
To: Aaron C mailto:aaroncr...@outlook.com>>
Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] A question about the HCP pipeline
No, since the subcortical data needed to be in MNI space, we c
No, since the subcortical data needed to be in MNI space, we chose to use
MNI space surfaces for each subject so that we only needed to generate a
single motion-corrected volume timeseries. Because the per-subject
processing uses the individual surfaces and the same warpfield for surface
and
