rts this:
3405 open("/dev/mem", O_RDONLY)= -1 EACCES (Permission denied)
FWIW dmidecode does the same.
samuel@haswell:~$ dmidecode
# dmidecode 2.12
/dev/mem: Permission denied
All the best,
Chris
--
Christopher SamuelSenior Systems Administrator
VLSCI - Victorian Life Science
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
On 30/03/14 02:04, Ralph Castain wrote:
> turns out that some linux distro's automatically set LS_COLORS in
> your environment when running old versions of csh/tcsh via their
> default dot files
For example RHEL6 does this..
- --
Ch
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On 03/09/13 02:03, Jiri Hladky wrote:
> I vote for --append-legend
I like that too, though the idea of an additional undocumented --jirka
option also appeals. :-)
- --
Christopher SamuelSenior Systems Administrator
VLSCI - Victorian L
image.
cheers,
Chris
- --
Christopher SamuelSenior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.org.au/ http://twitter.com/vlsci
-BEGIN PGP SIGNATURE-
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ws the node to which the device using the
IRQ reports itself as being attached. This hardware locality
information does not include information about any possible driver
locality preference."
cheers,
Chris
- --
Christopher SamuelSenior Systems Administrator
VLSCI - Victorian Life Scie
s library development package
License : MIT
Description : Development package for libpciaccess.
If they're not enabled then you won't see it.
cheers,
Chris
- --
Christopher SamuelSenior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu
than they appear, etc, etc, etc...
Of course it might be possible to ask the pciutils maintainer to split
out libpci from pciutils and LGPL it.
Interestingly, Steam for Linux appears to have linked to libpci..
http://steamcommunity.com/app/221410/discussions/1/846938351130480716/
cheers!
Chris
- --
d also much harder to maintain. Does anyone know of a good
# library for cgroups?
So I've pointed them at this thread and strongly encouraged them
to get involved.
cheers,
Chris
- --
Christopher SamuelSenior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
ce it's started asking for many more cores or
RAM.. :-)
> So we need the capability in ORTE to support the non-direct-launch
> cases.
I'm pretty sure we're agreeing here, just in different ways of
expressing ourselves.. :-)
cheers!
Chris
- --
Christopher SamuelSenior System
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On 06/11/12 01:43, Ralph Castain wrote:
> On Nov 4, 2012, at 7:28 PM, Christopher Samuel
> <sam...@unimelb.edu.au> wrote:
>
>> I would argue that the resource managers *should* be doing it
>
> No argument from me - I wou
if all tasks lives in
# the root memcg.
cheers,
Chris
- --
Christopher SamuelSenior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.org.au/ http://twitter.com/vlsci
-BEG
" when a new "PCI device" is
> added by the PCI backend.
That could also be useful to some folks for non-PCI devices, say if a
CPU gets hotplugged in/out (or more likely added/removed from a
cpuset/cgroup you're in).
- --
Christopher SamuelSenior Systems Administrator
V
/autoconf-2.67/html_node/C-Compiler.html
But not for C++:
http://www.gnu.org/savannah-checkouts/gnu/autoconf/manual/autoconf-2.69/html_node/C_002b_002b-Compiler.html
So perhaps the fact that they've never needed to implement
such a test is in itself a good guide ?
cheers,
Chris
- --
Christoph
ariant of lstopo and use the alternatives
system to select which to use.
cheers,
Chris
--
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
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On 25/04/12 23:44, Jeffrey Squyres wrote:
> FWIW: Having lstopo plugins for output would obviate the need for
> having two executable names.
IIRC that's generally handled via the alternatives system (or
diversions if you don't like alternatives) in Debian/Ubuntu.
--
Christopher
don't see that reported as a bug in the BTS, so I'd suggest
reporting it and seeing what happens.
http://bugs.debian.org/cgi-bin/pkgreport.cgi?src=nvidia-settings
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
E
attributes.
OK, please find attached both lstopo -v (with debug enabled) and also
the XML file requested. This is BG/P, not BG/Q of course!
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP SIGNATURE-
Version: GnuPG v1.4.11 (GNU/Linux)
Comment: Using GnuPG with M
ode to see what /proc
or /sys look like in each case.
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGI
uot;
Net L#3 "ib0"
OpenFabrics L#4 "mlx4_0"
Looks OK to me.
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unime
ut BG/P uses code derived from MPICH2 according
to: http://wiki.bg.anl-external.org/index.php/Main_Page
Our BG/P seems to claim it's from MPICH2 1.1:
samuel@tambo:~> mpicc -v
mpicc for 1.1
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Scien
't implement fork() or
execve(), they're designed to start your code and just keep running it
until it dies.
[1] - http://wiki.bg.anl-external.org/index.php/Cnk
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
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On 21/03/12 13:37, Daniel Ibanez wrote:
> Please let me know if theres a hint of what could be causing it,
> where to post, and what info to provide.
Are you running Linux or CNK on the compute nodes for this?
cheers!
Chris
- --
Chris
essages
> regarding sched_setaffinity() at build time, and the related test
> failures w/ SIGSEGV.
That fixes up the segmentation faults for me too with 1.4.
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@uni
ir}$tst
FAIL: glibc-sched
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP SIGNATURE-
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t's a help? Don't want to hold things up unnecessarily.
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN
irund on the service node which then launches the users
code on the compute nodes via the Navigator API.
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
5.5
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP SIGNATURE-
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Comm
o read by a human..
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP SIGNATURE-
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C
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On 04/07/11 19:18, Brice Goglin wrote:
> Christopher, it should work starting with trunk r3535.
Looks good to me with hwloc-1.3a1r3537. :-)
Thanks!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Scien
in field... yes
and it compiles and builds an lstopo which includes PCI info!
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-
t matches
> the makelog.txt? I see PCI checks in the configure
> stdout, but nothing about that in config.log...
Sigh, I think I ended up building in two different
locations somehow - as I said, it was late. :-)
I'll fix that up and send it on again..
Mea culpa, mea maxima culpa.. :-)
- --
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On 13/06/11 23:11, Jeff Squyres wrote:
> Chris -- could you send your config.log?
Posted but currently held for moderation due to size..
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computat
ciding that libpci is ok
> in configure if we cannot possibly ever link properly...
I suspect that this symbol is getting pulled in only
when it is being incorporated into the shared library,
or perhaps when pci_lookup_name() is being called ?
cheers!
Chris
- --
Christopher Samuel - Senior S
o my guess it's the fact that we only have a static
library that's causing the linker to pull in all the
symbols, whether needed or not. :-(
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phon
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On 13/06/11 22:22, Jeff Squyres wrote:
> Chris -- does nm on your libpci not show this?
Nope, there is no libpci.so* on RHEL5.6, just a libpci.a.
(and no, I've no idea why either!)
cheers!
Chris
- --
Christopher Samuel - Senior Syst
e works just fine and does add -lz.
Very odd!
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN P
-BEGIN PGP SIGNED MESSAGE-
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On 12/06/11 15:45, Christopher Samuel wrote:
> I *suspect* it's being pulled in by libpci - here:
>
> $ nm /usr/lib/libpci.a | grep res_query
> U __res_query
OK, looks like libpci may well be the culprit. Linking
with the def
-BEGIN PGP SIGNED MESSAGE-
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On 12/06/11 11:42, Christopher Samuel wrote:
> CCLD lstopo
> /tmp/hwloc-1.3a1r3511/src/.libs/libhwloc.so: undefined reference to
> `__res_query'
For the record this happens with system GCC & GCC 4.4,
Intel compilers and PGI comp
but it's not ending up in the libhwloc.so on that platform.
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP
d.c: In function 'hwloc_freebsd_get_thread_cpubind':
topology-freebsd.c:150: warning: passing argument 3 of 'pthread_getaffinity_np'
from incompatible pointer type
/usr/include/pthread.h:453: note: expected 'struct cpu_set_t *' but argument is
of type 'cpuset_t *'
Are these ignorable ?
cheers,
Chris
- --
Christopher
CE & Oprofile support was merged in 2.6.36 but support
for the 14h and 12h family temperature sensors was only
merged in 2.6.38.
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Pho
-BEGIN PGP SIGNED MESSAGE-
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On 31/03/11 07:13, Brice Goglin wrote:
> Comments?
Sounds reasonable to me.
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55
Email: zute...@au1.ibm.com
<http://www.ibm.com/systems/power/>
- - Forwarded by Peter Zutenis/Australia/IBM on 16/02/2011 16:00 -
From: Christopher Samuel <sam...@unimelb.edu.au>
To: Peter Zutenis/Australia/IBM@IBMAU
List-Post: hwloc-devel@lists.open-mpi.org
Date:
-BEGIN PGP SIGNED MESSAGE-
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On 15/02/11 00:56, Jeff Squyres wrote:
> Maybe get_current_cpuset?
get_recent_cpuset ?
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computation Initiative
Email: sam...@unimelb.edu.au Phone: +61 (
CMake there's a collective sigh
of "oh no, not again"..
Think of using autotools as a way of increasing your
karma by taking a little bit more pain in return for
decreasing a whole lot more sysadmins pain.. ;-)
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
V
on the right hand socket is partly truncated.
I've attached an OK and a truncated image to this for info
generated with v1.1.
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903
-BEGIN PGP SIGNED MESSAGE-
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On 16/12/10 18:12, Brice Goglin wrote:
> Le 16/12/2010 02:29, Christopher Samuel a écrit :
>> make check fails on our CentOS 5.4 box:
>
> We can safely ignore this failure. Can you change the exit line at the
> end of tests/linux/
i.org/community/help/
Passes on RHEL5.5/x86-64, SLES10/PPC and Ubuntu 10.10/x86-64.
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.a
is not defined
hwloc-distrib.c:199: warning: comparison between signed and unsigned
Any use ?
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://w
ogies - I do mean the labelling - I guess what I
was trying to say was that my preference is that the
labelling should depict the logical ordering.
Caffeine++; /* :-) */
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
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On 24/11/10 17:47, Christopher Samuel wrote:
> I can get the free(fullmask); to not fail if I comment out
> the memset() and migrate_pages() calls. If I just comment
> out the migrate_pages() then it still fails so there's
> som
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On 24/11/10 17:47, Christopher Samuel wrote:
> I can get the free(fullmask); to not fail if I comment out
> the memset() and migrate_pages() calls. If I just comment
> out the migrate_pages() then it still fails so there's
> som
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On 24/11/10 17:21, Christopher Samuel wrote:
> This is valgrind's summary of errors on PPC:
I meant to include the link to interpreting Valgrind output:
http://www.valgrind.org/docs/manual/quick-start.html#quick-start.interpret
More deta
obj = 0x10031180
str = 0x100365c0 "0x00ff"
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
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-BEGIN PGP SIGNAT
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On 22/11/10 15:51, Christopher Samuel wrote:
> Sadly I'm getting the same issue with hwloc-1.1rc2r2806,
> Valgrind hasn't been of any help either. :-(
I should say the problem does not exhibit itself with
valgrind. It also does not exhibit
(
I'm in the Qantas lounge for an hour or two with very
slow wifi (scored an upgrade on points) and then I'll
be offline for quite a while flying and then with jetlag.
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Emai
0 Aborted ${dir}$tst
FAIL: hwloc_bind
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP
0001f000 fd:03 175
/lib/ld-2.4.so
f800f000-f801 rw-p 0002 fd:03 175
/lib/ld-2.4.so
ffe5-ffe63000 rw-p ffe5 00:00 0
ffe63000-ffe64000 rw-p ffe63000 00:00 0
ffe64000-ffe65000 rw-p ffe64000 00:00 0
[stack]
/bin/sh: line 1: 453 Aborted ${dir}$tst
FAIL: hwloc_bind
tmp/hwloc/hwloc-1.1rc2/tests/linux/hwloc-gather-topology.sh: line 54:
/tmp/tmp.WPnBao1790/save//proc/stat: No such file or directory
Just did a quick make check with the 1.1rc2 vanilla and
can confirm those errors don't happen there.
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administra
e on this PPC64 box) are returning DT_UNKNOWN (0).
So the above loop will need to catch that and, if it is
DT_UNKNOWN, do a stat or lstat on the entry to find out
what it is. :-(
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Ini
-BEGIN PGP SIGNED MESSAGE-
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On 22/11/10 05:45, Christopher Samuel wrote:
> I'll try applying the same patch to the x86-64 build and doing
> a --enable-debug build there and compare them.
Looking at the strace and the source seems to show that
both builds
!
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
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-BEGIN PGP SIGNATURE-
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Comme
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On 19/11/10 17:01, Christopher Samuel wrote:
> Just tried this on our BlueGene/P management node
Now my brain is working again, attached is the output from
this system, with 3 PCI bridges.
Ignore the weird ethernet numbering, this is j
untu 10.04 and RHEL 5.5.
cheers,
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP SIGNATURE-
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ibs --without-system-libunwind
- --with-cpu=default32 --enable-secureplt --with-long-double-128
- --host=powerpc64-suse-linux
Thread model: posix
gcc version 4.1.2 20070115 (SUSE Linux)
Any ideas ?
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian
iple GPUs), that's
> probably what's happening here.
That would make sense, these are their SuperMicro based
systems, nothing unusual on these.
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.a
e 1.02rc2 tarball.
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Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
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-BEGIN PGP SIGNATURE-
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kernel ?
2.6.5-7.244-pseries64
cheers!
Chris
- --
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
-BEGIN PGP SIGNATURE-
Ve
On 02/06/10 04:03, Jeff Squyres wrote:
> So do we like 1.0.1rc1?
Looks OK to me.
--
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
Hi folks,
Was just going to point the other Torque developers
towards hwloc now 1.0 has been released and found I
couldn't link to the announcement of it as the archives
for the announce list don't work. :-(
http://www.open-mpi.org/MailArchives/hwloc-announce/
cheers,
Chris
--
Christopher
ual socket Nehalem box.
cheers,
Chris
--
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
http://www.vlsci.unimelb.edu.au/
On 07/05/10 04:45, Christopher Samuel wrote:
> make[1]: *** No rule to make target `hwloc.7', needed by `all-am'. Stop.
Confirming fixed in rc6, thanks!
--
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email:
gative value should be returned
if we abort due to not being to allocate enough memory.
cheers,
Chris
--
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Sciences Computational Initiative
Email: sam...@unimelb.edu.au Phone: +61 (0)3 903 55545
On 06/05/10 13:37, Brice Goglin wrote:
> Configure uses the pkgconfig file
Ahh, I was missing pkg-config being installed, wondered why
it was finding the libxml2 dev stuff I had!
cheers,
Chris
--
Christopher Samuel - Senior Systems Administrator
VLSCI - Victorian Life Scien
This bug seems easy to reproduce:
../configure
make
make distclean
../configure
make
[...]
make[1]: *** No rule to make target `hwloc.7', needed by `all-am'. Stop.
make[1]: Leaving directory `/home/samuel/Downloads/HWLOC/hwloc-1.0rc5/utils'
make: *** [all-recursive] Error 1
--
Christopher
zeof(pid_t));
line 328 of src/topology-linux.c in hwloc_linux_get_proc_tids():
tids = realloc(tids, max_tids*sizeof(pid_t));
line 1561 of src/topology.c in hwloc_discover():
objs = malloc(n_objs * sizeof(objs[0]));
Hope these are helpful!
Chris
--
Christopher Samuel - Seni
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