Re: [Ifeffit] Energy shift in exported data

2014-07-11 Thread Bruce Ravel 

On 07/11/2014 06:56 PM, George Sterbinsky wrote:

Hello,

I have noticed the following behavior in Athena 0.9.20 on OSX 10.8.5. If
a group with an energy shift applied is exported as norm(E) using the
export marked groups option then the energy shift is not preserved in
the .nor file. If the export current group option is used then the
energy shift is preserved. This seems to be general behavior and should
be straightforward to reproduce, but I can provide an example project if
needed.


You are correct.  Yikes!  I will try to get that fixed soon enough that 
Frank can get the fix into the next demeter-devel release for Mac.


Thanks,
B


--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2
 Building 535A
 Upton NY, 11973

 Homepage:http://xafs.org/BruceRavel
 Software:https://github.com/bruceravel
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[Ifeffit] Energy shift in exported data

2014-07-11 Thread George Sterbinsky 
Hello,

I have noticed the following behavior in Athena 0.9.20 on OSX 10.8.5. If a
group with an energy shift applied is exported as norm(E) using the export
marked groups option then the energy shift is not preserved in the .nor
file. If the export current group option is used then the energy shift is
preserved. This seems to be general behavior and should be straightforward
to reproduce, but I can provide an example project if needed.

Thank you,
George
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Re: [Ifeffit] Athena/Artemis/Atoms OSX (10.9.3) issues

2014-07-11 Thread Jennifer Carter 
Bruce,

Not frustrated...

I changed the "variable=tips" to "default=false" in "athena.demeter_conf"
file with and without changing "restart=1" to "restart=0" with no change in
the opening of the tips screen on the starting of Athena.

Will the update of the -devel package be announced to the mailing list or
should I just periodically check the demeter website?
ᐧ

Jennifer


On Fri, Jul 11, 2014 at 10:44 AM, Bruce Ravel  wrote:

> On 07/11/2014 11:30 AM, Jennifer Carter wrote:
>
>> but I can't seem to find the demeter.ini file  to change the "tips"
>> parameter to false.
>>
>
> It should be at $HOME/.horae/demeter.ini
>
> However, if you have never run Athena, then the tip dialog may show up
> before the .ini file gets written.  Hmmm...
>
> If so, then you need to find the "athena.demeter_conf" file with is
> under the place found by
>
>
>perl -e 'use Demeter; print $INC{"Demeter.pm"}, $/'
>
> in "Demeter/configuration/".  Near the top is a line that says
> "variable=tips".  Soon after that is a line that says "default=true".
> Edit true to false and try again.
>
>
> I am sorry I cannot be more helpful and less command-line-y, but I
> just don't own a Mac.  This is the best I can do.
>
> Or you can wait a few more days until the -devel package gets updated.
>
> I am sorry if this is frustrating for you.  I am working on it just as
> fast as I can.
>
>
> B
>
>
> --
>  Bruce Ravel   bra...@bnl.gov
>
>  National Institute of Standards and Technology
>  Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2
>  Building 535A
>  Upton NY, 11973
>
>  Homepage:http://xafs.org/BruceRavel
>  Software:https://github.com/bruceravel
>  Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] Athena/Artemis/Atoms OSX (10.9.3) issues

2014-07-11 Thread Bruce Ravel 

On 07/11/2014 11:30 AM, Jennifer Carter wrote:

but I can't seem to find the demeter.ini file  to change the "tips"
parameter to false.


It should be at $HOME/.horae/demeter.ini

However, if you have never run Athena, then the tip dialog may show up
before the .ini file gets written.  Hmmm...

If so, then you need to find the "athena.demeter_conf" file with is
under the place found by

   perl -e 'use Demeter; print $INC{"Demeter.pm"}, $/'

in "Demeter/configuration/".  Near the top is a line that says
"variable=tips".  Soon after that is a line that says "default=true".
Edit true to false and try again.


I am sorry I cannot be more helpful and less command-line-y, but I
just don't own a Mac.  This is the best I can do.

Or you can wait a few more days until the -devel package gets updated.

I am sorry if this is frustrating for you.  I am working on it just as
fast as I can.

B


--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2
 Building 535A
 Upton NY, 11973

 Homepage:http://xafs.org/BruceRavel
 Software:https://github.com/bruceravel
 Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] Athena/Artemis/Atoms OSX (10.9.3) issues

2014-07-11 Thread Jennifer Carter 
Frank and Bruce,

Frank and Bruce, thanks for your fast response. I downloaded demeter-devel,
which fixed both problems (since it appears to have also deleted the
autosave file).

*Now Athena is hanging on the tip of the day.*

I found the archive thread on this topic from 07/03/14
http://www.mail-archive.com/ifeffit@millenia.cars.aps.anl.gov/msg04471.html

but I can't seem to find the demeter.ini file  to change the "tips"
parameter to false.
1) I tried using the search function in the Finder
2) I also used the terminal to find the demeter folder:

  perl -e 'use Demeter; print $INC{"Demeter.pm"}, $/'


Is there a better method of finding this file so that I can fixe the tips
hanging problem?

Thanks
Jennifer
ᐧ

~
Jennifer L.W. Carter

Assistant Professor
Department of Materials Science and Engineering
Case Western Reserve University

*500B White Building*



*10900 Euclid Ave.Cleveland, OH 44106-4901phone: (216)
368-4214email: jennifer.w.car...@case.edu *


On Fri, Jul 11, 2014 at 9:36 AM, Bruce Ravel  wrote:

>
> The second issue is known and has been discussed on the mailing list. It's
> one o fthe main reasons Frank made the demeter-devel package:
>
>
> http://www.mail-archive.com/ifeffit@millenia.cars.aps.anl.
> gov/msg04404.html
>
> As for the first issue, I am not clear what exactly is happening.  This
> works as expected, at least on my linux machine.  Are you not able to press
> either of the buttons on the dialog?  Do you press one or the other and it
> hangs?  Does the dialog not appear on the screen?
>
> What happens if you simply delete the autosave file?  (It should be
> $HOME/.horae/stash/Athena.autosave)
>
> B
>
>
>
> On 07/11/2014 10:19 AM, Jennifer Carter wrote:
>
>> I am running into the following issues (screen shots for each are
>> attached)
>>
>> *1st) starting athena from the terminal*
>>
>>
>> I get the following message but the software hangs (rainbow wheel of
>> death) and I am unable to advance to the main page
>>
>> "Athena found and autosave file. Would you like to import"
>>
>> I tried uninstalling in terminal:sudo port uninstall xorg-server demeter
>> and reinstalling in terminal:sudo port install xorg-server demeter
>>
>> but the program still hangs
>>
>>
>> *2nd) The screens for artemis and atoms have black backgrounds so that
>> the text is hidden.*
>>
>> As a new user I am having a hard time using the software in a semi-blind
>> mode.
>>
>> Thanks
>> Jennifer
>>
>> ~
>> Jennifer L.W. Carter
>>
>> Assistant Professor
>> Department of Materials Science and Engineering
>> Case Western Reserve University
>>
>> /500B White Building/
>> /10900 Euclid Ave.
>>
>> Cleveland, OH 44106-4901
>> phone: (216) 368-4214
>> email: jennifer.w.car...@case.edu /
>> Inline image 3
>>
>> Inline image 4
>>
>>
>> ᐧ
>>
>>
>> ___
>> Ifeffit mailing list
>> Ifeffit@millenia.cars.aps.anl.gov
>> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>>
>>
>
> --
>  Bruce Ravel   bra...@bnl.gov
>
>  National Institute of Standards and Technology
>  Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2
>  Building 535A
>  Upton NY, 11973
>
>  Homepage:http://xafs.org/BruceRavel
>  Software:https://github.com/bruceravel
>  Demeter: http://bruceravel.github.io/demeter/
> ___
> Ifeffit mailing list
> Ifeffit@millenia.cars.aps.anl.gov
> http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
>
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Re: [Ifeffit] Athena/Artemis/Atoms OSX (10.9.3) issues

2014-07-11 Thread Bruce Ravel 


The second issue is known and has been discussed on the mailing list. 
It's one o fthe main reasons Frank made the demeter-devel package:



http://www.mail-archive.com/ifeffit@millenia.cars.aps.anl.gov/msg04404.html

As for the first issue, I am not clear what exactly is happening.  This 
works as expected, at least on my linux machine.  Are you not able to 
press either of the buttons on the dialog?  Do you press one or the 
other and it hangs?  Does the dialog not appear on the screen?


What happens if you simply delete the autosave file?  (It should be 
$HOME/.horae/stash/Athena.autosave)


B


On 07/11/2014 10:19 AM, Jennifer Carter wrote:

I am running into the following issues (screen shots for each are attached)

*1st) starting athena from the terminal*

I get the following message but the software hangs (rainbow wheel of
death) and I am unable to advance to the main page

"Athena found and autosave file. Would you like to import"

I tried uninstalling in terminal:sudo port uninstall xorg-server demeter
and reinstalling in terminal:sudo port install xorg-server demeter

but the program still hangs


*2nd) The screens for artemis and atoms have black backgrounds so that
the text is hidden.*
As a new user I am having a hard time using the software in a semi-blind
mode.

Thanks
Jennifer

~
Jennifer L.W. Carter

Assistant Professor
Department of Materials Science and Engineering
Case Western Reserve University

/500B White Building/
/10900 Euclid Ave.
Cleveland, OH 44106-4901
phone: (216) 368-4214
email: jennifer.w.car...@case.edu /
Inline image 3

Inline image 4


ᐧ


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--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2
 Building 535A
 Upton NY, 11973

 Homepage:http://xafs.org/BruceRavel
 Software:https://github.com/bruceravel
 Demeter: http://bruceravel.github.io/demeter/
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Re: [Ifeffit] Athena/Artemis/Atoms OSX (10.9.3) issues

2014-07-11 Thread Schima, Frank 

On Jul 11, 2014, at 8:19 AM, Jennifer Carter 
mailto:jwc...@case.edu>> wrote:

2nd) The screens for artemis and atoms have black backgrounds so that the text 
is hidden.
As a new user I am having a hard time using the software in a semi-blind mode.

This issue has come up in the mailing list recently. Use demeter-devel instead.

See my post and solution there:



Cheers!
-Frank

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Re: [Ifeffit] trial release #9 for Windows for Demeter 0.9.20 (Bruce Ravel)

2014-07-11 Thread Matt Newville 
Hi Kathy,

Thanks, but the automated link shown in the email reader wasn't actually
the problem.  Badari's report showed the full url (ending with pre9.exe)
and the result was not "file not found" but "access denied".

Looking for the 0.9.20 pre9 exe now gives a "file not found" error -- Bruce
must have removed it.

--Matt
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Re: [Ifeffit] trial release #9 for Windows for Demeter 0.9.20 (Bruce Ravel)

2014-07-11 Thread Kathy Dardenne 
Hello,

 

It is just because your E-Mail program has cut a part of the link. If you take 
it in whole an d paste in the browser it is working.

Here the links pieces are glued back.

 

> 64 bit:

https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9.20_(64)_pre9.exe

 

 

> 

> 32 bit:

https://s3.amazonaws.com/demeter4xas/Demeter_Installer_for_Windows_0.9.20_(32)_pre9.exe

 

Greetings

 

From: ifeffit-boun...@millenia.cars.aps.anl.gov 
[mailto:ifeffit-boun...@millenia.cars.aps.anl.gov] On Behalf Of Badari Rao
Sent: Thursday, July 10, 2014 7:24 PM
To: ifeffit@millenia.cars.aps.anl.gov
Subject: Re: [Ifeffit] trial release #9 for Windows for Demeter 0.9.20 (Bruce 
Ravel)

 

Dear Dr. Bruce,

I am not able to download the installation file from the link provided by you. 
It gives some kind of "access denied" error. I don't know if this is caused by 
some firewall from my institute or is a genuine problem. I have attached a 
screenshot of the error. Could you perhaps provide another link to download the 
file?
Inline image 2

Thanking You,


-- Yours Sincerely,

Badari Narayana. A. R.
Ph.D Student, Nanoscience and Nanotechnology,
c/o Prof Rajeev Ranjan,
Electroceramics Lab,
Department of Materials Engineering,
Indian Institute of Science.

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