[jira] [Updated] (MATH-1006) Add support for embedding Tex in javadoc via MathJax

2013-07-14 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-1006?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-1006: -- Description: It would be convenient to be able to embed Tex expressions in javadoc. This can be

[jira] [Updated] (MATH-1006) Add support for embedding Tex in javadoc via MathJax

2013-07-14 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-1006?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-1006: -- Attachment: mathjax.patch First attempt at a patch to activate this. Works when javadoc is explicitly

[jira] [Commented] (MATH-1000) Add mode function to Frequency class

2013-07-07 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-1000?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13701599#comment-13701599 ] Phil Steitz commented on MATH-1000: --- Might be better to better to return a List or an

[jira] [Closed] (MATH-992) Requesting a StorelessQuantile object

2013-06-13 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-992?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz closed MATH-992. Resolution: Duplicate This duplicates MATH-418. Patches welcome. Personally, I would prefer an

[jira] [Commented] (MATH-418) add a storeless version of Percentile

2013-06-13 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-418?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13682422#comment-13682422 ] Phil Steitz commented on MATH-418: -- Another algorithm to consider is P-Square

[jira] [Commented] (MATH-984) Incorrect (bugged) generating function getNextValue() in .random.EmpiricalDistribution

2013-06-04 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-984?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13674430#comment-13674430 ] Phil Steitz commented on MATH-984: -- Thanks, Radoslav. I agree with your point 2 and after

[jira] [Resolved] (MATH-987) SimpleRegression needs to be map/reducable

2013-06-02 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-987?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-987. -- Resolution: Fixed Fix Version/s: 4.0 Patch applied in r1488849 with the following changes: *

[jira] [Resolved] (MATH-978) StorelessCovariance to be map/reducable

2013-05-31 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-978?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-978. -- Resolution: Fixed Fix Version/s: 4.0 Slightly modified patch applied in r1488337. Changes to the

[jira] [Commented] (MATH-987) SimpleRegression needs to be map/reducable

2013-05-31 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-987?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13671706#comment-13671706 ] Phil Steitz commented on MATH-987: -- Thanks for the patch! This patch is hard to work with,

[jira] [Commented] (MATH-983) Add an overview of all supported real distributions

2013-05-31 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-983?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13671729#comment-13671729 ] Phil Steitz commented on MATH-983: -- I like Gilles' idea of splitting off the guide and

[jira] [Commented] (MATH-984) Incorrect (bugged) generating function getNextValue() in .random.EmpiricalDistribution

2013-05-31 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-984?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13671773#comment-13671773 ] Phil Steitz commented on MATH-984: -- That should work. Looks like you have hit a new bug,

[jira] [Commented] (MATH-984) Incorrect (bugged) generating function getNextValue() in .random.EmpiricalDistribution

2013-05-31 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-984?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13671779#comment-13671779 ] Phil Steitz commented on MATH-984: -- One more comment on getNextValue implementation. If we

[jira] [Comment Edited] (MATH-984) Incorrect (bugged) generating function getNextValue() in .random.EmpiricalDistribution

2013-05-31 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-984?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13671773#comment-13671773 ] Phil Steitz edited comment on MATH-984 at 5/31/13 7:50 PM: --- That

[jira] [Commented] (MATH-984) Incorrect (bugged) generating function getNextValue() in .random.EmpiricalDistribution

2013-05-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-984?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13669588#comment-13669588 ] Phil Steitz commented on MATH-984: -- Thanks, I get the second problem now. To really

[jira] [Comment Edited] (MATH-984) Incorrect (bugged) generating function getNextValue() in .random.EmpiricalDistribution

2013-05-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-984?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13669588#comment-13669588 ] Phil Steitz edited comment on MATH-984 at 5/29/13 7:12 PM: ---

[jira] [Commented] (MATH-984) Incorrect (bugged) generating function getNextValue() in .random.EmpiricalDistribution

2013-05-28 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-984?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13668469#comment-13668469 ] Phil Steitz commented on MATH-984: -- Ack on the first issue (deviates should be constrained

[jira] [Commented] (MATH-981) An improved algorithm for computing the inverse cumulative probability for the normal distribution

2013-05-26 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-981?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13667415#comment-13667415 ] Phil Steitz commented on MATH-981: -- Unless it is *a lot* slower, I would be +1 to improving

[jira] [Commented] (DBCP-398) DBCP hangs on common pool borrowObject when PoolableConnection is used and the underlying connection closed unexpectedly (connection resets/timouts)

2013-05-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-398?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13666376#comment-13666376 ] Phil Steitz commented on DBCP-398: -- Thanks, Sarvesh. Looking at the client code, I now

[jira] [Updated] (DBCP-398) DBCP hangs on common pool borrowObject when PoolableConnection is used and the underlying connection closed unexpectedly (connection resets/timouts)

2013-05-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-398?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated DBCP-398: - Affects Version/s: 2.0 1.2 1.3 1.4

[jira] [Comment Edited] (DBCP-398) DBCP hangs on common pool borrowObject when PoolableConnection is used and the underlying connection closed unexpectedly (connection resets/timouts)

2013-05-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-398?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13666376#comment-13666376 ] Phil Steitz edited comment on DBCP-398 at 5/24/13 3:02 PM: ---

[jira] [Issue Comment Deleted] (DBCP-398) DBCP hangs on common pool borrowObject when PoolableConnection is used and the underlying connection closed unexpectedly (connection resets/timouts)

2013-05-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-398?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated DBCP-398: - Comment: was deleted (was: This could be a regression caused by the fix for DBCP-233.) DBCP hangs on

[jira] [Commented] (DBCP-398) DBCP hangs on common pool borrowObject when PoolableConnection is used and the underlying connection closed unexpectedly (connection resets/timouts)

2013-05-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-398?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13666835#comment-13666835 ] Phil Steitz commented on DBCP-398: -- I am inclined to agree that having isClosed return true

[jira] [Commented] (DBCP-398) DBCP hangs on common pool borrowObject when PoolableConnection is used and the underlying connection closed unexpectedly (connection resets/timouts)

2013-05-23 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-398?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13665381#comment-13665381 ] Phil Steitz commented on DBCP-398: -- I have a question for the OP. Does your problem go

[jira] [Commented] (DBCP-398) DBCP hangs on common pool borrowObject when PoolableConnection is used and the underlying connection closed unexpectedly (connection resets/timouts)

2013-05-22 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-398?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13664719#comment-13664719 ] Phil Steitz commented on DBCP-398: -- I will take a careful look in the next couple of days.

[jira] [Commented] (MATH-978) StorelessCovariance to be map/reducable

2013-05-21 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-978?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13663248#comment-13663248 ] Phil Steitz commented on MATH-978: -- Thanks! Can you please a) either explain or point to

[jira] [Commented] (MATH-963) Interface RandomGenerator is missing nextLong(long) method

2013-04-04 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-963?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13622535#comment-13622535 ] Phil Steitz commented on MATH-963: -- The reason the method is missing from the interface is

[jira] [Commented] (MATH-963) Interface RandomGenerator is missing nextLong(long) method

2013-04-04 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-963?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13623256#comment-13623256 ] Phil Steitz commented on MATH-963: -- While you can't use a RandomGenerator instance directly

[jira] [Commented] (MATH-817) Multivariate Normal Mixture Model Fitting by Expectation Maximization

2013-03-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-817?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13617346#comment-13617346 ] Phil Steitz commented on MATH-817: -- Yes, but I think you mean / in place of the second + on

[jira] [Updated] (MATH-437) Kolmogorov Smirnov Distribution

2013-03-27 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-437?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-437: - Fix Version/s: (was: 3.2) 4.0 Kolmogorov Smirnov Distribution

[jira] [Commented] (MATH-891) SpearmansCorrelation fails when using NaturalRanking together with NaNStrategy.REMOVED

2013-03-27 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-891?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13615500#comment-13615500 ] Phil Steitz commented on MATH-891: -- I am OK with committing this patch, but lets keep the

[jira] [Commented] (DBCP-372) Statement Leak occurs when batch update is used.

2013-03-26 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-372?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13614103#comment-13614103 ] Phil Steitz commented on DBCP-372: -- Any other comments / suggestions on this? It might

[jira] [Commented] (MATH-437) Kolmogorov Smirnov Distribution

2013-03-26 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-437?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13614601#comment-13614601 ] Phil Steitz commented on MATH-437: -- I think we should bump this to 4.0 or at least 3.3. It

[jira] [Commented] (DBCP-397) Exception ORA-01000 [Number of open cursors exceeds the limit] is faced when prepared statement pooling is enabled in DBCP 1.3

2013-03-25 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-397?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13613153#comment-13613153 ] Phil Steitz commented on DBCP-397: -- Does your application do batch updates? If so, this

[jira] [Commented] (MATH-917) More distance measurements are needed in o.a.c.m.stat.clustering.

2013-03-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-917?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13612361#comment-13612361 ] Phil Steitz commented on MATH-917: -- I don't want to hold this up. If everyone else is OK

[jira] [Commented] (MATH-917) More distance measurements are needed in o.a.c.m.stat.clustering.

2013-03-23 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-917?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13611780#comment-13611780 ] Phil Steitz commented on MATH-917: -- In general, I like this. It may be best to do this as a

[jira] [Resolved] (MATH-598) Improving RandomDataTest

2013-03-17 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-598?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-598. -- Resolution: Fixed What is left of this issue was fixed in r1457491. Improving

[jira] [Updated] (MATH-857) Include a VIF and TOLERANCE check for a 2 dimensional double array, to determine variables that cause multi-colinearity issues and should be excluded from the models

2013-03-17 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-857?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-857: - Fix Version/s: (was: 3.2) 4.0 Absent further patches, pushing this to 4.0.

[jira] [Updated] (MATH-918) Manhattan distance

2013-03-17 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-918?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-918: - Fix Version/s: 4.0 Manhattan distance -- Key: MATH-918

[jira] [Updated] (MATH-919) Chebyshev distance

2013-03-17 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-919?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-919: - Fix Version/s: 4.0 Chebyshev distance -- Key: MATH-919

[jira] [Updated] (MATH-920) Canberra Distance

2013-03-17 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-920?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-920: - Fix Version/s: 4.0 Canberra Distance - Key: MATH-920

[jira] [Resolved] (MATH-671) EmpiricalDistribution(Impl) should support a pluggable kernel

2013-03-16 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-671?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-671. -- Resolution: Fixed Fixed in r1457372 EmpiricalDistribution(Impl) should support a

[jira] [Resolved] (MATH-672) EmpiricalDistribution(Impl) should implement the Distribution interface

2013-03-15 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-672?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-672. -- Resolution: Fixed Sorry. Forgot to resolve this when the fix was committed (r142) and changes.xml

[jira] [Updated] (MATH-946) Array Scaling

2013-03-15 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-946?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-946: - Fix Version/s: 3.2 Array Scaling - Key: MATH-946 URL:

[jira] [Resolved] (MATH-946) Array Scaling

2013-03-15 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-946?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-946. -- Resolution: Fixed Patch with minor javadoc modifications applied in r1457130. Many thanks.

[jira] [Commented] (MATH-859) Fix and then deprecate isSupportXxxInclusive in RealDistribution interface

2013-03-10 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-859?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13598322#comment-13598322 ] Phil Steitz commented on MATH-859: -- The methods can't actually be removed until 4.0, so

[jira] [Commented] (MATH-859) Fix and then deprecate isSupportXxxInclusive in RealDistribution interface

2013-03-10 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-859?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13598535#comment-13598535 ] Phil Steitz commented on MATH-859: -- Personally, I think it is better to put fix version at

[jira] [Commented] (MATH-907) org.apache.commons.math3.special.Gamma comments have bad characters

2013-01-19 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-907?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13558052#comment-13558052 ] Phil Steitz commented on MATH-907: -- The Ant build is there because not all users use maven.

[jira] [Resolved] (MATH-907) org.apache.commons.math3.special.Gamma comments have bad characters

2013-01-19 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-907?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-907. -- Resolution: Fixed org.apache.commons.math3.special.Gamma comments have bad characters

[jira] [Resolved] (POOL-229) Move AbandonedObjectPool from DBCP to POOL

2013-01-10 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-229?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved POOL-229. -- Resolution: Fixed Nothing left here. Was just waiting for review to resolve. Move

[jira] [Reopened] (MATH-876) In v3, Bundle-SymbolicName should be org.apache.commons.math3 (not org.apache.commons.math as currently)

2013-01-06 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-876?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz reopened MATH-876: -- +1 to apply Niall's patch In v3, Bundle-SymbolicName should be org.apache.commons.math3

[jira] [Resolved] (POOL-231) GOP, GKOP invalidateObject is not threadsafe

2012-12-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-231?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved POOL-231. -- Resolution: Fixed Fixed in r1426799. GOP, GKOP invalidateObject is not threadsafe

[jira] [Commented] (COMMONSSITE-21) commons-parent-6 pom changes

2012-12-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/COMMONSSITE-21?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13540984#comment-13540984 ] Phil Steitz commented on COMMONSSITE-21: Too bad we have lost the svn commit

[jira] [Commented] (MATH-915) Backward compatibility broken in EmpiricalDistribution

2012-12-13 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-915?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13532084#comment-13532084 ] Phil Steitz commented on MATH-915: -- I am sorry I screwed this up in my last commit. The

[jira] [Commented] (POOL-231) GOP, GKOP invalidateObject is not threadsafe

2012-12-04 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-231?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13509739#comment-13509739 ] Phil Steitz commented on POOL-231: -- This is better: {code} synchronized (p) { if

[jira] [Commented] (POOL-231) GOP, GKOP invalidateObject is not threadsafe

2012-12-04 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-231?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13509891#comment-13509891 ] Phil Steitz commented on POOL-231: -- OK, I will try to get a similar fix for GKOP, which I

[jira] [Updated] (POOL-231) GOP, GKOP invalidateObject is not threadsafe

2012-12-03 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-231?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated POOL-231: - Description: There does not appear to be sufficient sync protection for the destroyCount and createCount

[jira] [Commented] (POOL-231) GOP, GKOP invalidateObject is not threadsafe

2012-12-03 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-231?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13508841#comment-13508841 ] Phil Steitz commented on POOL-231: -- Sorry the original test that I included in the

[jira] [Created] (POOL-231) GOP, GKOP invalidateObject is not threadsafe

2012-12-02 Thread Phil Steitz (JIRA)
Phil Steitz created POOL-231: Summary: GOP, GKOP invalidateObject is not threadsafe Key: POOL-231 URL: https://issues.apache.org/jira/browse/POOL-231 Project: Commons Pool Issue Type: Bug

[jira] [Commented] (POOL-213) _numActive can go negative

2012-12-01 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-213?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13508036#comment-13508036 ] Phil Steitz commented on POOL-213: -- In the 1.x versions of pool, there is no guarantee that

[jira] [Commented] (MATH-907) org.apache.commons.math3.special.Gamma comments have bad characters

2012-11-23 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-907?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13503280#comment-13503280 ] Phil Steitz commented on MATH-907: -- I committed what should be a fix for this issue in

[jira] [Commented] (MATH-899) A random crash of MersenneTwister random generator

2012-11-18 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-899?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13499882#comment-13499882 ] Phil Steitz commented on MATH-899: -- I think the reason that the unit test does not work is

[jira] [Commented] (MATH-902) org.apache.commons.math3.exception.TooManyEvaluationsException should return best found result

2012-11-17 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-902?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13499511#comment-13499511 ] Phil Steitz commented on MATH-902: -- I understand the practical objective here, but I don't

[jira] [Commented] (MATH-899) A random crash of MersenneTwister random generator

2012-11-16 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-899?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13499026#comment-13499026 ] Phil Steitz commented on MATH-899: -- I am -1 on attempting to make this class threadsafe.

[jira] [Commented] (MATH-899) A random crash of MersenneTwister random generator

2012-11-16 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-899?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13499297#comment-13499297 ] Phil Steitz commented on MATH-899: -- Sounds reasonable to me. A random

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497274#comment-13497274 ] Phil Steitz commented on MATH-894: -- I had the same thought about the dependency and agree

[jira] [Commented] (MATH-894) Cleanup of ResizableDoubleArray (o.a.c.m.util)

2012-11-14 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13497589#comment-13497589 ] Phil Steitz commented on MATH-894: -- Changing names or removing private fields does not

[jira] [Commented] (MATH-894) Spurious method call in ResizableDoubleArray (o.a.c.m.util)

2012-11-13 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13496237#comment-13496237 ] Phil Steitz commented on MATH-894: -- I am sorry but I just realized (thanks to the unit test

[jira] [Commented] (MATH-894) Spurious method call in ResizableDoubleArray (o.a.c.m.util)

2012-11-12 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13495695#comment-13495695 ] Phil Steitz commented on MATH-894: -- I agree that getInternalValues should be deprecated;

[jira] [Commented] (MATH-894) Spurious method call in ResizableDoubleArray (o.a.c.m.util)

2012-11-12 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-894?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13495793#comment-13495793 ] Phil Steitz commented on MATH-894: -- I never liked apply as a name. IIRC it goes back to

[jira] [Resolved] (MATH-878) G-Test (Log-Likelihood ratio - LLR test) in math.stat.inference

2012-11-11 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-878?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-878. -- Resolution: Fixed In r1408172, I changed method names to match the conventions of the other classes in

[jira] [Updated] (MATH-878) G-Test (Log-Likelihood ratio - LLR test) in math.stat.inference

2012-11-11 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-878?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-878: - Affects Version/s: (was: 3.2) (was: 4.0) (was:

[jira] [Commented] (MATH-878) G-Test (Log-Likelihood ratio - LLR test) in math.stat.inference

2012-11-04 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-878?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13490276#comment-13490276 ] Phil Steitz commented on MATH-878: -- Implementation code committed in r1405620. I made no

[jira] [Commented] (MATH-878) G-Test (Log-Likelihood ratio - LLR test) in math.stat.inference

2012-10-30 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-878?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13486940#comment-13486940 ] Phil Steitz commented on MATH-878: -- I have this just about ready to be committed. I don't

[jira] [Commented] (MATH-884) isSymmetric in MatrixUtils

2012-10-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-884?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13486036#comment-13486036 ] Phil Steitz commented on MATH-884: -- Sorry, I misread the code, thinking the first method

[jira] [Commented] (MATH-886) SingularValueDecomposition fails to calcuate matrix rank

2012-10-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-886?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13486118#comment-13486118 ] Phil Steitz commented on MATH-886: -- This looks like a duplicate to MATH-465, which was

[jira] [Comment Edited] (MATH-886) SingularValueDecomposition fails to calcuate matrix rank

2012-10-29 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-886?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13486118#comment-13486118 ] Phil Steitz edited comment on MATH-886 at 10/29/12 4:20 PM: This

[jira] [Commented] (MATH-884) isSymmetric in MatrixUtils

2012-10-28 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-884?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13485799#comment-13485799 ] Phil Steitz commented on MATH-884: -- +1 to move this, but I have one question: why do we

[jira] [Created] (MATH-885) Move array parameter validation checks from ChiSquareTest to MathArrays

2012-10-28 Thread Phil Steitz (JIRA)
Phil Steitz created MATH-885: Summary: Move array parameter validation checks from ChiSquareTest to MathArrays Key: MATH-885 URL: https://issues.apache.org/jira/browse/MATH-885 Project: Commons Math

[jira] [Resolved] (MATH-885) Move array parameter validation checks from ChiSquareTest to MathArrays

2012-10-28 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-885?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz resolved MATH-885. -- Resolution: Fixed Changes committed in r1403169 Move array parameter validation checks

[jira] [Commented] (MATH-757) ResizableDoubleArray is not thread-safe yet has some synch. methods

2012-10-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-757?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13483359#comment-13483359 ] Phil Steitz commented on MATH-757: -- Good point on breaking existing usage if we drop the

[jira] [Commented] (MATH-757) ResizableDoubleArray is not thread-safe yet has some synch. methods

2012-10-23 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-757?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13482623#comment-13482623 ] Phil Steitz commented on MATH-757: -- Good catch on the extraneous should Contract above.

[jira] [Commented] (MATH-672) EmpiricalDistribution(Impl) should implement the Distribution interface

2012-10-22 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-672?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13481393#comment-13481393 ] Phil Steitz commented on MATH-672: -- I have this coded, am just finishing tests. I may be

[jira] [Commented] (MATH-757) ResizableDoubleArray is not thread-safe yet has some synch. methods

2012-10-22 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-757?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13481395#comment-13481395 ] Phil Steitz commented on MATH-757: -- +1 to just drop the syncs.

[jira] [Created] (MATH-881) Eliminate meaningless properties in multivariate distribution classes

2012-10-18 Thread Phil Steitz (JIRA)
Phil Steitz created MATH-881: Summary: Eliminate meaningless properties in multivariate distribution classes Key: MATH-881 URL: https://issues.apache.org/jira/browse/MATH-881 Project: Commons Math

[jira] [Commented] (MATH-881) Eliminate meaningless properties in multivariate distribution classes

2012-10-18 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-881?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13479468#comment-13479468 ] Phil Steitz commented on MATH-881: -- Sweet! I did not realize this was post-3.0 stuff.

[jira] [Created] (MATH-877) Allow catagory data to be provided as SummaryStatistics in OneWayAnova

2012-10-09 Thread Phil Steitz (JIRA)
Phil Steitz created MATH-877: Summary: Allow catagory data to be provided as SummaryStatistics in OneWayAnova Key: MATH-877 URL: https://issues.apache.org/jira/browse/MATH-877 Project: Commons Math

[jira] [Updated] (MATH-877) Allow catagory data to be provided as SummaryStatistics in OneWayAnova

2012-10-09 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-877?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-877: - Attachment: OneWayAnova.java Attached by Peter Andrews in 9 Oct 2012 post to d...@commons.apache.org

[jira] [Updated] (MATH-877) Allow category data to be provided as SummaryStatistics in OneWayAnova

2012-10-09 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-877?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-877: - Summary: Allow category data to be provided as SummaryStatistics in OneWayAnova (was: Allow catagory data

[jira] [Commented] (POOL-230) waiting on 0x00000000e7440168 (a org.apache.commons.pool.impl.GenericObjectPool$Latch)

2012-10-05 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-230?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13470582#comment-13470582 ] Phil Steitz commented on POOL-230: -- Absent any evidence that there is an actual pool bug

[jira] [Comment Edited] (MATH-460) Levy Distribution

2012-09-26 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-460?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13448513#comment-13448513 ] Phil Steitz edited comment on MATH-460 at 9/27/12 8:25 AM: ---

[jira] [Commented] (MATH-460) Levy Distribution

2012-09-26 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-460?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13464189#comment-13464189 ] Phil Steitz commented on MATH-460: -- The test is doing a crude verification that the

[jira] [Commented] (POOL-230) waiting on 0x00000000e7440168 (a org.apache.commons.pool.impl.GenericObjectPool$Latch)

2012-09-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-230?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13461912#comment-13461912 ] Phil Steitz commented on POOL-230: -- Looks like normal behavior to me when the pool is

[jira] [Commented] (POOL-230) waiting on 0x00000000e7440168 (a org.apache.commons.pool.impl.GenericObjectPool$Latch)

2012-09-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-230?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13462305#comment-13462305 ] Phil Steitz commented on POOL-230: -- Can you attach a full thread dump? Are you sure your

[jira] [Commented] (POOL-230) waiting on 0x00000000e7440168 (a org.apache.commons.pool.impl.GenericObjectPool$Latch)

2012-09-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-230?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13462350#comment-13462350 ] Phil Steitz commented on POOL-230: -- Are the 2. or 3. type threads holding connections? Are

[jira] [Commented] (POOL-230) waiting on 0x00000000e7440168 (a org.apache.commons.pool.impl.GenericObjectPool$Latch)

2012-09-24 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/POOL-230?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13462428#comment-13462428 ] Phil Steitz commented on POOL-230: -- Also, if any threads are interrupted, or if the

[jira] [Commented] (MATH-856) Deprecate NullArgumentException

2012-09-08 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-856?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13451346#comment-13451346 ] Phil Steitz commented on MATH-856: -- Probably better to take this discussion back to the

[jira] [Commented] (MATH-857) Include a VIF and TOLERANCE check for a 2 dimensional double array, to determine variables that cause multi-colinearity issues and should be excluded from the models

2012-09-08 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-857?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13451355#comment-13451355 ] Phil Steitz commented on MATH-857: -- This is a great start. I would say rename the class

[jira] [Created] (MATH-859) Fix and then deprecating isSupportXxxInclusive in RealDistribution interface

2012-09-08 Thread Phil Steitz (JIRA)
Phil Steitz created MATH-859: Summary: Fix and then deprecating isSupportXxxInclusive in RealDistribution interface Key: MATH-859 URL: https://issues.apache.org/jira/browse/MATH-859 Project: Commons Math

[jira] [Updated] (MATH-859) Fix and then deprecate isSupportXxxInclusive in RealDistribution interface

2012-09-08 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-859?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-859: - Summary: Fix and then deprecate isSupportXxxInclusive in RealDistribution interface (was: Fix and then

[jira] [Updated] (MATH-859) Fix and then deprecate isSupportXxxInclusive in RealDistribution interface

2012-09-08 Thread Phil Steitz (JIRA)
[ https://issues.apache.org/jira/browse/MATH-859?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Phil Steitz updated MATH-859: - Description: The conclusion from [1] was never implemented. We should deprecate these properties from the

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