I got the latest version up and running. There definitely has been a change in
file format...It may just be for UHF on linear molecules. I'll generate an
additional set of test files to check this.
Jonathan
On Aug 18, 2010, at 4:48 PM, Jonathan Gutow wrote:
We'll figure it out. I need
Nico,
Can you point to a specific piece of offending code? If the statements
really are the syntax you are suggesting they make little sense.
Jonathan
On Aug 17, 2010, at 12:12 PM, Nicolas Vervelle wrote:
Hi,
Could we get rid of the 'dead code' warnings ?
Most of them are due to
On Jul 24, 2010, at 6:00 AM, Nicolas Vervelle wrote:
Hi everyone,
We are currently building Jmol for at least Java 1.5.
What about modifying Jmol code to take more advantages of Java 1.5
features (annotations, generics, ...) ?
I'm all for anything that improves performance or makes the
Seems OK by me.
Jonathan
On Jul 20, 2010, at 3:59 PM, Robert Hanson wrote:
Please let me know if this is going to be a problem. We'll also release one
last minor update of Jmol 11.8.
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN
I was wondering if Android would support java applets in browsers, but so far
it does not. Part of the problem appears to be that the GUI in Android is just
a kind of JVM, which makes it difficult to launch another JVM inside it. I
found a little that suggests it can be done, but nothing very
vecmath is definitely not part of the Java API. I've only been able
to find it as part of Java3D.
Jonathan
On Jul 14, 2010, at 3:22 AM, Egon Willighagen wrote:
On Tue, Jul 13, 2010 at 9:40 PM, Miguel Howard mig...@jmol.org
wrote:
Bob Nico, we used to use a 3rd party implementation of
I find this very amusing as before the applet tag there was just the object
tag...So now we're reverting!
Jonathan
On Jul 14, 2010, at 2:48 PM, Angel Herráez wrote:
Bob is probably more knowledgeable than me, but this is how I see things:
If you have the HTML4 doctype in the header, the
Bob,
I'm trying to track the error you reported. I think I've found it,
but want to verify that I am looking at the right situation. I see
problems when I click on the checkboxes without having added any views/
instances to the Instance list. Is that the situation you saw
problems in or
Ok, I'll fix that. Just wanted to make sure I shouldn't be looking
for another problem too.
Jonathan
On Jul 10, 2010, at 10:27 AM, Robert Hanson wrote:
yes, that's what I saw,
On Sat, Jul 10, 2010 at 8:59 AM, Jonathan Gutow gu...@uwosh.edu
wrote:
Bob,
I'm trying to track the error
at 9:19 AM, Jonathan Gutow gu...@uwosh.edu
wrote:
I agree they are very spread out, but the intent is to add quite a few
more and there won't be room across the top.
Jonathan
On Jul 8, 2010, at 8:29 AM, Robert Hanson wrote:
PS, I think it would be nicer to have those checkboxes packed
a
snapshot.
On Wed, Jul 7, 2010 at 7:12 PM, Jonathan Gutow gu...@uwosh.edu
wrote:
Haven't seen this. Which browser, os and local or server?
Sent from my iPod
Jonathan Gutow
jgu...@new.rr.com
On Jul 7, 2010, at 4:09 PM, Robert Hanson hans...@stolaf.edu wrote:
I get a null pointer
click on a
checkbox in the application WebExport dialog before you create a
snapshot.
On Wed, Jul 7, 2010 at 7:12 PM, Jonathan Gutow gu...@uwosh.edu
wrote:
Haven't seen this. Which browser, os and local or server?
Sent from my iPod
Jonathan Gutow
jgu...@new.rr.com
On Jul 7, 2010
Hmm...let me look at this again. I'm now confused. I thought we decided that
jmolColorPicker should take an appletID. It is much more convenient for using
all these functions to just specify the appletID in the call to the function.
I'm still not clear on why one would want to use a
Haven't seen this. Which browser, os and local or server?
Sent from my iPod
Jonathan Gutow
jgu...@new.rr.com
On Jul 7, 2010, at 4:09 PM, Robert Hanson hans...@stolaf.edu wrote:
I get a null pointer exception immediately when I open the Pop-In Jmol page
and click a checkbox.
--
Robert M
Some good ideas.
On Jul 7, 2010, at 4:54 PM, Robert Hanson wrote:
A few more, while we are at it...
id=AnimContrl
not showing suffix 0,1,2,etc.
Have to check this. We should be keeping track of which is which, thanks.
JmolColorPickerBox(scriptStr, [0,0,0], 'backbox1', '1')
is
While working on jmolColorPicker and the widgets in WebExport, I've realized
that the behavior of our javascript utility functions is inconsistent. Some of
them take and appletID and some of them need the appletID set before they are
called using another function. I would like to propose that
I was looking at the api documenttation for javax.vecmath and realized that the
present release is 1.5.2 while we have 1.2 in Jmol. Do we want to update this?
Jonathan
Dr. Jonathan H. Gutow
Chemistry Departmentgu...@uwosh.edu
UW-Oshkosh
, 2010, at 10:31 AM, Egon Willighagen wrote:
On Mon, Jul 5, 2010 at 4:44 PM, Jonathan Gutow gu...@uwosh.edu wrote:
I was looking at the api documenttation for javax.vecmath and realized that
the present release is 1.5.2 while we have 1.2 in Jmol. Do we want to
update
it using
print load(https://...;)
and see what it says there.
Bob
On Tue, Jun 29, 2010 at 4:59 PM, Jonathan Gutow gu...@uwosh.edu wrote:
I think this is a MacOSX FF bug. This problem does not occur using webkit
browsers in MacOSX. I've also only seen it with Jmol inside
I think this is a MacOSX FF bug. This problem does not occur using webkit
browsers in MacOSX. I've also only seen it with Jmol inside SageMath. Here's
what I see in the Java Console.
FileManager opening
https://141.233.197.45:4443/home/gutow/7/cells/1/sage0-size500.jmol?1277842997
script
This seems better. I still think we should consider whether to make
things more similar to standard GUI programs, but this present
behavior should not cause people trouble.
Jonathan
On Jun 17, 2010, at 2:08 PM, Robert Hanson wrote:
The JFileChooser automatically jumps into a directory when
This is going to be very confusing to the user, if we actually show the .html
extension. I suggest we go to standard GUI program behavior. I think we need
Save and Save As... options just as in most standard GUI programs. If no
directory of the chosen name exists then one is created and
Bob and Angel,
Presently if you try to save a WebExport page with the same name as one
you've already made (ie update it), you end up opening the existing directory
and saving a new one inside of it. I thought we had set this up to just
replace the files within the existing directory. Bob,
Angel,
I think everything you've done is working in web export. Thanks. I haven't
found any problems. I still have to fire up a Windows VM and play with IE, but
not problems in Mozilla and WebKit browsers. I'm going to see if I can get my
cranky windows VM to boot. I'll let you know if I
OK, I'll check that too. Thought I'd finally fixed that.
Jonathan
On Jun 16, 2010, at 5:41 PM, Angel Herráez wrote:
Jonathan, the local path issue is still not working
12.0.RC19
I have .. set in both server and local paths in the ExportToWeb panel. The
page I get (both
PopIn or
Found it and committed a fix. You had missed a few links when translating and
were still linking to the English pages.
Jonathan
On Jun 16, 2010, at 5:30 PM, Angel Herráez wrote:
Ok, so I've just tested RC19
The WebPageMaker Help pages display all in Spanish, until when I click on the
Fixed in my last commit. Sorry, I did a copy and paste from a test page and
deleted the flags to replace these values with the user values.
It seems to all be working now. Please give it one last test.
Thanks,
Jonathan
On Jun 16, 2010, at 5:41 PM, Angel Herráez wrote:
Jonathan, the local
debug ON when you create
the applet and see what it tells you in those cases.
Bob
On Wed, Jun 9, 2010 at 11:34 AM, Jonathan Gutow gu...@uwosh.edu wrote:
I'm getting the following inconsistent behavior from the 11.8.24
applet. There is still some possibility that it is related to
problems
Although not very familiar with pymol I think the following
translations might work:
two_sided_lighting -- fullylit
cartoon_fancy_sheets --- turn on antialias for cartoons
Anybody have other ideas or corrections?
Jonathan
On Jun 9, 2010, at 7:07 AM, jaime.prilu...@weizmann.ac.il wrote:
Dear
I'm getting the following inconsistent behavior from the 11.8.24
applet. There is still some possibility that it is related to
problems with communicating with a server that is also updating the
pages, but I think I have eliminated those problems. This is for the
SAGEMATH package.
What
I'm working on a slicer tool and want to make sure I'm clear about how planes
are defined within the transform manager as I want to adjust the slab and depth
planes in real time based on user input. Here's my understanding.
1) Planes are defined by point4f's where the x, y, z coordinates
track that down?
Bob
On Sat, May 22, 2010 at 10:13 PM, Jonathan Gutow gu...@uwosh.edu wrote:
I think on 10.6.3 macs the script interpreter is running afoul of the 64-bit
hotspot VM when it starts the processes to create the console. Webkit
browsers are defaulting to that rather
I think on 10.6.3 macs the script interpreter is running afoul of the 64-bit
hotspot VM when it starts the processes to create the console. Webkit browsers
are defaulting to that rather than the 32 bit version. Any idea if we are
using code that is not 64 bit compliant in the applet?
I
From the changes on going to J2SE (which appear to be implemented in JSE 6.
Maybe this relates?
Class Loader - Previously, it was possible to specify a non-binary class name
to ClassLoader methods that take a String class name argument. This unintended
behaviour was not compliant with the
PM, Jonathan Gutow gu...@uwosh.edu wrote:
OK. It doesn't get very far. Here's all I see.
JmolConsole is initializing
AppletConsole initialized
Interface.java Error creating instance for org.jmol.applet.AppletConsole:
null
Definitely still works in non-webKit browsers like FireFox. I get
Messages will appear here. Enter commands in the box
below. Click the console Help menu item for on-line help, which will appear
in a new browser window. null
On Sun, May 9, 2010 at 10:46 AM, Jonathan Gutow gu...@uwosh.edu wrote:
Yep, it fails after initializing attributes
=,preferredSize=],rootPaneCheckingEnabled=true]
set(3)
AppletConsole is initializing...viewer
I'm betting you get some of that but not all.
Bob
On Thu, May 6, 2010 at 9:27 PM, Jonathan Gutow gu...@uwosh.edu wrote:
Yes, the error message comes from testing on your site. But I see the same
I saw the problem initially when I was testing locally. I'm pretty
sure I was using JmolApplet.jar at that point, but will check again
tonight.
Jonathan
On May 6, 2010, at 11:20 AM, Robert Hanson wrote:
much simpler problem! So my first thought is that there is something
missing in the
JmolApplet0.jar.
On Thu, May 6, 2010 at 12:37 PM, Jonathan Gutow gu...@uwosh.edu wrote:
I saw the problem initially when I was testing locally. I'm pretty
sure I was using JmolApplet.jar at that point, but will check again
tonight.
Jonathan
On May 6, 2010, at 11:20 AM, Robert Hanson wrote
, Jonathan Gutow gu...@uwosh.edu
wrote:
Begin forwarded message:
From: Jonathan Gutow jgu...@new.rr.com
Date: May 3, 2010 9:06:30 PM CDT
To: jmol-developers@lists.sourceforge.net
Subject: Little more info on the hang on calling console from a web
page...
onclick=void(jmolScript
I've tried playing with the java console.
In FireFox, which worked before, opening the java console adds one thing to the
thread list (last item):
Group
http://chemapps.stolaf.edu/jmol/docs/examples-11/-threadGroup,ac=4,agc=0,pri=4
thread applet-JmolApplet,4,alive
Working fine on the following Mac combination:
Safari: 4.0.5 (5531.22.7)
MacOS X 10.5.8
I'll check at home again with 10.6, where the problem occurred.
Maybe, I've got behind on my Safari upgrades.
On May 4, 2010, at 9:08 AM, Robert Hanson wrote:
Same problem I'm having with my web pages. No longer works in Safari.
Everything else does. Maybe we have a problem in Jmol.js or WebKit has changed?
Jonathan
On May 3, 2010, at 8:47 PM, Robert Hanson wrote:
Hmm, it's a standard operation. Are you seeing the problem at
Begin forwarded message:
From: Jonathan Gutow jgu...@new.rr.com
Date: May 3, 2010 9:06:30 PM CDT
To: jmol-developers@lists.sourceforge.net
Subject: Little more info on the hang on calling console from a web page...
onclick=void(jmolScript('console'));
works in FireFox
Pretty convinced it is a webkit problem. OmniWeb 5.10 has the same problem.
Jonathan
On May 3, 2010, at 9:11 PM, Jonathan Gutow wrote:
Same problem I'm having with my web pages. No longer works in Safari.
Everything else does. Maybe we have a problem in Jmol.js or WebKit has
changed
Actually, I get worse behavior if I use JmolScript(), an almost complete hang .
The popup menu still shows up, but doesn't seem to allow selection.version
12.0RC9
Jonathan
On May 1, 2010, at 5:17 PM, Jonathan Gutow wrote:
I get the same result with jmolScript().
Jonathan
On May 1
I get the same result with jmolScript().
Jonathan
On May 1, 2010, at 3:36 PM, Robert Hanson wrote:
no, no -- don't use JmolScriptWait. Why use wait?
On Fri, Apr 30, 2010 at 9:51 PM, Jonathan Gutow gu...@uwosh.edu wrote:
Bob,
I was adding your requested Jmol Console button to the widgets
Bob,
I was adding your requested Jmol Console button to the widgets and ran into
some odd behavior while testing it. The following javascript call must be used
twice to make the console open and it pretty much hangs all other Jmol
activity. The Console menu item in the popup seems to work
);
return null;
}
return buf;
}
On Wed, Apr 28, 2010 at 8:06 PM, Jonathan Gutow gu...@uwosh.edu
wrote:
I've run into a problem using some of the internal resources inside
the Jmol.jar for WebExport. If anybody knows what I'm doing wrong
please let me know.
Running inside Eclipse
Because webexport accesses files that are distributed with Jmol, I like to test
changes using a rebuilt distribution. However, recreating the javadocs takes
a long time. Can I create a distribution without going through the javadocs
rebuild?
hmm...in the background javadoc is now giving a
Bob et al.,
I figured it out. I was using calls of the form
object.getClass().getResource(), which can only access things within the
calling class. Your suggested call to ClassLoader.getSystemResource(fullPath)
works. I'm doing something a little simpler in WebExport so didn't use
anything
My question exactly.
On Apr 28, 2010, at 12:45 PM, Egon Willighagen wrote:
Like JChemPaint?
Egon
If this were done, might it be best to keep them as separate
applications and make sure they can communicate or is it worth folding
them into one application? I worry about Jmol getting to
I've run into a problem using some of the internal resources inside the
Jmol.jar for WebExport. If anybody knows what I'm doing wrong please let me
know.
Running inside Eclipse my code works.
As a compiled .jar I find that the resource URL is null instead of a usable
value.
Note it continues
Should be OK for Macs. Linux users that are not updating should. I
assume Windows is beyond that version too.
Jonathan
On Apr 27, 2010, at 4:17 PM, Robert Hanson wrote:
Does it matter that Jmol 12 will require Java 1.5?
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
I think that is the best option, but it requires rewriting some of the
resource access code in WebExport, which assumes things are in
webexport.html by default. It turns out there was also a problem with
reading binary and not text files (copybinaryfiles will only read
external resources
Dear All:
In the Animation control widget, I am developing for WebExport, I use some of
the standard button icons used in Jmol. Up to this point we have kept all the
resources for WebExport in the WebExport/html part of the .jar file. The
question is whether we should continue to keep this
Eran and Henry,
I agree this is something we need to worry about. I've looked into
the cross-compiler a little. It might work, but will require some
heavy lifting on the part of someone. The other problem is that to
get set up to deal with the proprietary Apple environment requires an
I won't touch anything until you are done.
Jonathan
On Apr 8, 2010, at 12:15 PM, Robert Hanson wrote:
Major refactoring in Jmol going on right now. Please let me know if
you are working on code. Shouldn't affect translation.
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf
Angel,
That sounds like a good idea. Here's the link to everything in one
.zip.
http://www.uwosh.edu/faculty_staff/gutow/Jmol_Web_Page_Maker/Examples.zip
It's about 2.4 MB with all the associated data files.
Jonathan
On Apr 4, 2010, at 10:59 AM, Herráez Sánchez Ángel wrote:
...@stolaf.edu
wrote:
ABSOLUTELY One suggestion -- for the echo fonts I suggest:
font echo 20 bold
Bob
On Mon, Mar 29, 2010 at 3:47 PM, Jonathan Gutow gu...@uwosh.edu
wrote:
Dear All,
The demo of Jmol capabilities available at the link below got Ooohs
and Aaahs at the National ACS
Dear All,
The demo of Jmol capabilities available at the link below got Ooohs
and Aaahs at the National ACS meeting I just presented at. I had it
running in the middle of my title slide. Since people liked it, I
think we should consider either using this as the demo on the Jmol web
page
On Mar 18, 2010, at 12:35 PM, R. Kent Wenger wrote:
On Thu, 18 Mar 2010, Jonathan Gutow wrote:
Since you've selected your bonds in the connect command just follow
that line with
color bond blue
You can insert your favorite color:)
So you're saying that the color part is an entirely
Bob,
I was just looking at your new*.htm pages as I prepare my ACS
presentation. The applet is huge in these pages. Is that
intentional? It ends up with the div it is in as a scrolling div.
MacOS 10.5, Firefox 3.6 and Safari 4.05.
Jonathan
Dr. Jonathan
Pravin,
The Jmol code is quite opaque because things are reused as much as
possible. Since you've loaded Eclipse I suggest you follow the code by using
the open declaration option in the right-button menu. This will help you dig
into what is being done. You probably want to start
My last post reminded me that I haven't replaced my quick and dirty Hex--
decimal routines in the new web export code I just checked in with the ones
from g3d. I may not have time to get to that until next week, but I am aware
that it needs to be done.
Jonathan
at a time...
On Sun, Mar 7, 2010 at 1:11 PM, Jonathan Gutow gu...@uwosh.edu
wrote:
Dear fellow developers:
I know we somewhere have the code for translating rgb color codes
into hexadecimal (since scripts take either).
org.jmol.util.Escape
public static String getHexColorFromRGB(int argb
Dear fellow developers:
I know we somewhere have the code for translating rgb color codes into
hexadecimal (since scripts take either). Do we also have the reverse? And
where are we hiding it? I'm trying to cleanly mesh some existing javascript
widgets with Jmol through WebExport and would
3-D plotting with Jmol is possible. The largest variety of examples
is within the SAGEmath package. See for example a preliminary
reworking of the SAGE 3-D interface that uses Jmol
(https://141.233.197.45:4443/home/pub/0/
NOTE: i'm using a self-signed security certificate that will
I believe you must create your own SourceForge account first. This is
not the same thing as being given commit rights to the Jmol project.
Jonathan
On Feb 9, 2010, at 9:38 AM, P.Canepa wrote:
I tried to check out the Jmol with eclipse as you explained in the
guide online
Can't think of anything I've worked on that requires the backwards
compatibility. We'll just have to test.
Jonathan
On Feb 1, 2010, at 3:58 PM, Robert Hanson wrote:
Well, a little project I started over the weekend turned into a
monster. But I think it's done, and if there are no bugs,
I agree with Angel's comments below except that I think the auto
feature is a good idea. It may be a little strange to handle
different files differently, but pdb files without H's would give a
strange idea of the molecule size if you use the new BABEL settings
instead of the JMOL (which
Bob et al..
I like the idea of a Jmol widgets package. However, we will have to
think a little about what should be where. Many of the things such as
buttons and menus that are in Jmol javascript are just widgets too.
We have to be careful about moving them for backwards
Bob,
This sounds good. I will try to get a look at it. I have rather limited
network access at the moment, so don't expect much feedback for a while.
On the rotations, I think I understand what you are talking about. Your
problem is not the rotations, but deciding what set of
I think these questions are primarily for Bob.
I'm starting to look at the plot3D class and think about what would
need to be extracted from surfaces provided as meshes/jvxl to plot and
scale them. I haven't looked at this portion of the code in detail
before so have a few questions:
1)
, Jonathan Gutow gu...@uwosh.edu
wrote:
As I've been playing with making user changes in the Jmol view
transfer to pop-up applets I've run into the fact that the returned
stateinfo does not include the setting of defaultdirectory. Is this
intentional? If so I can work around
As I've been playing with making user changes in the Jmol view
transfer to pop-up applets I've run into the fact that the returned
stateinfo does not include the setting of defaultdirectory. Is this
intentional? If so I can work around it. If not are there any
objections to putting it
JVXL file format now allows for arbitrary
lines drawn on a mesh. Any color, any direction, any number. So that
is the real way to go -- produce JVXL files that can display the
desired lines and load them. mesh is not up to it.
Bob
On Fri, Nov 27, 2009 at 10:25 AM, Jonathan Gutow gu
I've been cooperating with the SAGE development team to get Jmol
working better for viewing 3-D plots in SAGE. We are still discussing
what a plot primitive would look like, but I ultimately think that is
the way things should go.
However, a separate issue of how meshes look has come up.
compact form of if:
if (xxx == undefined) xxx=yyy
as
xxx == undefined (=yyy)
same s
xxx != undefined || (=yyy)
Bob
On Sun, Nov 15, 2009 at 5:05 PM, Jonathan Gutow gu...@uwosh.edu
wrote:
Bob,
I think you're correct. The user may want no suffix for some
I found the example that had triggered my memory. It is a different
case. It will not be a problem.
Jonathan
On Nov 17, 2009, at 10:01 AM, Jonathan Gutow wrote:
I haven't got time to dig for the example, but I believe I've seen
being interpreted as null. If I finish my grading I will try
Bob,
I think you're correct. The user may want no suffix for some
reason. If I understand fully the way Jmol.js reponds now this will
be changing the behavior. I believe passing for namesuffix now
appends an automatic index to the applet. I still think it would be
the most
it
will, thus I think we should change the private code to fix this.
Jonathan
On Nov 13, 2009, at 9:34 PM, Robert Hanson wrote:
Why use n=0?
On Fri, Nov 13, 2009 at 5:09 PM, Jonathan Gutow gu...@uwosh.edu
wrote:
I'm looking for some ideas here.
I have been working on some additional
I vote for Bob as he is making other changes to Jmol.js at the moment.
I'm still a little confused as my tests showed that null worked for
both an undefined variable and str=. I only tested in Safari and
Firefox. Maybe they're more forgiving.
Jonthan
On Nov 14, 2009, at 12:18 PM, Angel
I'm looking for some ideas here.
I have been working on some additional javascript code that
automatically limits the number of live jmol applets on a page to
avoid memory problems. Here's my problem:
1) In a simple page that loads once, repeated javascript calls that
replace an applet
in Jmol.js.
Jonathan
On Nov 13, 2009, at 5:09 PM, Jonathan Gutow wrote:
I'm looking for some ideas here.
I have been working on some additional javascript code that
automatically limits the number of live jmol applets on a page to
avoid memory problems. Here's my problem:
1) In a simple page
Is there a reason you are not just generating a multiframe file of one
of the formats Jmol reads. Then you can just use the standard Jmol
load calls and not have to worry about inline strings. Are you trying
to do the generation in javascript on the user's machine?
Jonathan
On Nov 1,
I may have a chance to look at this this weekend, if someone else
cannot check it first. Off the top of my head this does sound like it
should work, and I don't see how it would break other things. If you
get to check this post to the list so that I won't duplicate effort.
Jonathan
On Oct
to download these files for local viewing
to pages made by webexport. Hmmm...some buttons and a table template
first...
Jonathan
On Sep 21, 2009, at 8:56 AM, Robert Hanson wrote:
That's fixed. trailing \n character.
On Sun, Sep 20, 2009 at 9:45 AM, Jonathan Gutow gu...@uwosh.edu
wrote:
I
I think this question is primarily for Bob. At present if you try to
load a file created using the write ZIP|ZIPALL command Jmol cannot
read it (although it works well to unzip the file and load the .spt
file). The Resolver pops this error at line 216,
NOTE: file recognized as a script
Dear All,
I know Bob Hanson is already planning for Jmol related workshops at
the 2010 BCCE, but I was wondering if anybody has plans to present
anything Jmol related at the Spring 2010 National ACS meeting in San
Francisco? I'm planning to be there for other reasons, but could
Bob,
Wow! I'll try to take a look in the next day or so. This sounds
perfect and I agree that the $SCRIPT_PATH$ global will be very useful.
Jonathan
On Sep 8, 2009, at 7:04 AM, Robert Hanson wrote:
Slight revision:
1) It's a ZIP file. You can name it anything you want using the
Angel,
Thanks for worrying about this. Here are my thoughts.
1) I don't think this belongs in the pop-up menu.
2) I vote for a the pull-down menu File Save as... and a File
Save. The second option would resave an opened compressed jmol file
in its new state and would only be
a bug there, though...
write ?.jmol
does not work, and
write test.jmol
does not call up a dialog.
Bob
On Tue, Sep 8, 2009 at 11:41 AM, Jonathan Gutow gu...@uwosh.edu
wrote:
Angel,
Thanks for worrying about this. Here are my thoughts.
1) I don't think this belongs in the pop
, Jonathan Gutow gu...@uwosh.edu
wrote:
Angel,
Thanks for worrying about this. Here are my thoughts.
1) I don't think this belongs in the pop-up menu.
2) I vote for a the pull-down menu File Save as... and a File
Save. The second option would resave an opened compressed jmol file
, Sep 4, 2009 at 8:18 AM, Jonathan Gutow gu...@uwosh.edu
wrote:
Dear All,
Based on what Bob has done below for relative file paths I
think we
(Bob?) can now make a compressed jmol save file, which is something I
was considering doing based on the jmolInstance used for web export
Angel,
Unless others can think of a reason, I'd suggest commit and we will
test. However, note that Bob just did some changes to when the dialog
is activated. Make sure to merge those changes in before you commit.
Since we can monitor commits, we will have some idea of what
Dear All,
Based on what Bob has done below for relative file paths I think we
(Bob?) can now make a compressed jmol save file, which is something I
was considering doing based on the jmolInstance used for web export.
Here's my idea:
1) Copy the data file, state script and any
Bob,
I may be able to make this work. It will be in a new fiscal year so
I can probably get travel funding. I'd be willing to help with either
workshop. Is workshop 1 appropriate for the webexport function or do
we want an even lower level workshop?
I may also have to be
Bob,
dipole molecular now appears to be working properly except that it
does not default to the stated 0.4 ang side offset. I'm not sure it
should. Maybe that should be removed from the documentation?
The script editor looks really good! Wow! I haven't had a lot of
time
The message below was sent by one of the programmers of my favorite
data analysis package in answer to a question about strings in IGORs
internal scripting language. The key point is made below the word
Simplify. These guys maintain and debug in record time (typical
turnaround on bug
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