[Jmol-users] Pmesh usage

2005-07-09 Thread Miguel
3) I have been experimenting with pmesh surfaces but can not get them to load correctly. Is this supported in v10, and if so am I using the correct syntax: pmesh (surface-name) file-nameto load the surface pmesh surface-nameto

Re: [Jmol-users] RE: Jmol-users digest, Vol 1 #738 - 8 msgs

2005-07-09 Thread Miguel
Miguel- The file (http://web.centre.edu/muzyka/organic/butane/butane.xyz) DOES exist. Jennifer, you may think that it exists, but it is not true. Try to open http://web.centre.edu/muzyka/organic/butane/butane.xyz in a web browser using the URL above ... you will get a 404 - not found error

[Jmol-users] Jmol keyboard usage

2005-07-09 Thread Miguel
1) is there a list of the mouse functions for Jmol, I assume the are the same, or very similar to, those for Chime? Similar, but not the same. Keys were modified to better support mice with a single mouse button. It has been written up on the mailing list several times. I do not recall

Re: [Jmol-users] questions

2005-07-09 Thread Angel Herraez
On 8 Jul 2005 at 16:13, Richard Spinney wrote: 1)is there a list of the mouse functions for Jmol, I assume they are the same, or very similar to, those for Chime? The basic functions in Chime are functional in jmol also -with very small differences. Jmol has more new gestures available.

Re: [Jmol-users] backbone and sidechain on glycine

2005-07-09 Thread Angel Herraez
I see Jmol's way is more reasonable. This arose because of a script that I had which does not work when delivered to Jmol, but now I have rewritten the script in a different way --using the atom ID's-- so it now works in both Chime and Jmol. On 8 Jul 2005 at 20:42, timothy driscoll wrote:

[Jmol-users] Mouse use / Mouse gestures

2005-07-09 Thread Angel Herraez
I have posted a page in Jmol Wiki summarizing the use of mouse buttons, keys and gestures -at least the basic ones- It is in English at http://wiki.jmol.org/MouseManual and, in Spanish, at http://wiki.jmol.org/ManualRat%c3%b3n Verification or help from Mac and Linux users is needed to complete

[Jmol-users] set connect false

2005-07-09 Thread Miguel
2) Is there a command similar to the set connect false in Chime which turns off any automated bonding and enforces only the bonding found in a pdb (or mol) file. It would also turn off any bonding from a xyz file (i.e. only display the atoms, no bonds)? The underlying functionality is

Re: [Jmol-users] Mouse use / Mouse gestures

2005-07-09 Thread Miguel
I have posted a page in Jmol Wiki summarizing the use of mouse buttons, keys and gestures -at least the basic ones- It is in English at http://wiki.jmol.org/MouseManual and, in Spanish, at http://wiki.jmol.org/ManualRat%c3%b3n Angel, Thank you for taking the time to post these pages.

Re: [Jmol-users] Mouse use / Mouse gestures

2005-07-09 Thread Angel Herraez
On 9 Jul 2005 at 12:36, Miguel wrote: Jmol's behavior is the same on Windows, Linux, and Mac OS. Jmol does not distinguish between operating systems. OK, that's very good, but there may be differences in the keyboard modifiers -or not?- or their names (Command key? Conbtrol key? Apple key?) I

Re: [Jmol-users] Mouse use / Mouse gestures

2005-07-09 Thread Miguel
On 9 Jul 2005 at 12:36, Miguel wrote: Jmol's behavior is the same on Windows, Linux, and Mac OS. Jmol does not distinguish between operating systems. OK, that's very good, but there may be differences in the keyboard modifiers -or not?- or their names (Command key? Conbtrol key? Apple