Re: [Jmol-users] save orientation?

2006-05-22 Thread Timothy Driscoll
On May 22, 2006, at 10:23 p, Samuel Flores wrote: Hi Guys, I'm trying to write some code to let the viewer rotate the molecule to their liking, then have a high resolution image made based on that orientation. B I wonder if there is some way to track and output the on-screen orientation.

[Jmol-users] save orientation?

2006-05-22 Thread Samuel Flores
Hi Guys, I'm trying to write some code to let the viewer rotate the molecule to their liking, then have a high resolution image made based on that orientation. B I wonder if there is some way to track and output the on-screen orientation. Once I know what rotations were applied in jmol, I can re-

Re: [Jmol-users] jmol tricks of the trade: base href

2006-05-22 Thread Bob Hanson
oh, yeah! Einar Coutin wrote: I bet you have done that with mine, haven't you? ;) 2006/5/12, Bob Hanson <[EMAIL PROTECTED]>: Jmol users, Happy Friday! I was just thinking that a technique I use a lot might interest some of the others on this list. Say there's a web page that uses Jmol in

Re: [Jmol-users] jmol tricks of the trade: base href

2006-05-22 Thread Einar Coutin
I bet you have done that with mine, haven't you? ;)2006/5/12, Bob Hanson <[EMAIL PROTECTED]>: Jmol users,Happy Friday! I was just thinking that a technique I use a lot mightinterest some of the others on this list.Say there's a web page that uses Jmol in an interesting way and youwant to see how it

Re: [Jmol-users] I have a perl script to generate pages displaying orbitals/isosurfaces...

2006-05-22 Thread Miguel
Jonathan wrote: > An example of the kind of page it generates may be seen at: > http://www.uwosh.edu/faculty_staff/gutow/Orbitals/Cl/Cl_AOs.html Jonathan, Your page looks very nice. On your page you offer to render orbitals as 'solid', 'mesh', or 'dots'. You may also want to consider offering

Re: [Jmol-users] question about spinning

2006-05-22 Thread rgb
On Mon, May 22, 2006 5:36 am, Angel Herraez said: > I would say the spinning could retain its status, at least in respect to > spin x , y , z. I don't see why the spin should be an applet state as opposed to a molecule state. I can see setting some things as an applet (or rendering) state that yo

Re: [Jmol-users] question about spinning

2006-05-22 Thread Angel Herraez
I would say the spinning could retain its status, at least in respect to spin x , y , z. Not sure about the new prototype spin around internal / molecule axes, which could be weird to transfer to a new molecule. --- Using Tomcat but need to

Re: [Jmol-users] question about spinning

2006-05-22 Thread Angel Herraez
I would say the spinning could retain its status, at least in respect to spin x , y , z. Not sure about the new prototype spin around internal / molecule axes, which could be weird to transfer to a new molecule. --- Using Tomcat but need to do

[Jmol-users] I have a perl script to generate pages displaying orbitals/isosurfaces...

2006-05-22 Thread Jonathan Gutow
Is anyone interested in a perl script that generates a web page using jmol to view multiple selectable isosurfaces/orbitals? An example of the kind of page it generates may be seen at: http://www.uwosh.edu/faculty_staff/gutow/Orbitals/Cl/Cl_AOs.html The perl script is a bit of a rough and ready

Re: [Jmol-users] image data

2006-05-22 Thread Miguel
> Sorry for the mail but I'm having trouble getting an account to post on > the > board. > I have a basic jmol page with options added via the script library and it > is > working well. > I have seen a post that indicates the best way to save an image from an > applet > is to post the data to a cg

[Jmol-users] Today Deadline: 3Dsig: Struct Bioinfo & Comp Biophysics

2006-05-22 Thread 3Dsig06
Today is the abstract submission deadline for "3Dsig: Structural Bioinformatics & Computational Biophysics" - A satellite meeting of the annual conference (ISMB) of the International Society for Comptuational Biology. The meeting will take place on Aug. 4-5, Fortaleza, Brazil: http://3dsig.weizmann

[Jmol-users] ".mol" format annimations?

2006-05-22 Thread Joe Ivanic
Hi, I have just discovered JMOL and it is very good. However, I may have questions that have already been addressed. The ".mol" format is most useful for me right now as I can decide which atoms (or nodes of a network in my case) are connected. I cannot figure out how to have an animation us

Re: [Jmol-users] image data

2006-05-22 Thread Bob Hanson
an example of this is out there. I was playing with it when I was working on the CONFCHEM paper OK, where is that now. Bob Hanson [EMAIL PROTECTED] wrote: Sorry for the mail but I'm having trouble getting an account to post on the board. I have a basic jmol page with options added via

[Jmol-users] image data

2006-05-22 Thread bio5eh
Sorry for the mail but I'm having trouble getting an account to post on the board. I have a basic jmol page with options added via the script library and it is working well. I have seen a post that indicates the best way to save an image from an applet is to post the data to a cgi script and echo i