[Jmol-users] new documentation popup method

2006-09-06 Thread Bob Hanson
Jmol users: Please test the new documentation pop-up examples. http://www.stolaf.edu/academics/chemapps/jmol/docs/ I've abandoned the idea of writing the whole page via JavaScript and instead now just load a template http://www.stolaf.edu/academics/chemapps/jmol/docs/popupTemplate.htm with

[Jmol-users] space group testing site

2006-09-06 Thread Bob Hanson
crystallography enthusiasts: I'd be interested in reactions to http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/spacegroup.htm This page allows rapid exploration of different space groups for a any model that you can clip into the text area. Choose a known space group, or just

Re: [Jmol-users] h-Bonds

2006-09-06 Thread Annemarie Honegger
Dear Bobthank you very much for the quick fix of the h-bond problem!It really works fine now. (Of course, it would be really nice toto be able to have side chain hydrogen bonds too)I just spent a rather exhausting day teaching half a dozenChemistry teachers how to use Jmol, and they went awayvery

Re: [Jmol-users] new documentation popup method

2006-09-06 Thread David Leader
Please try the atom expressions example. Tested on Safari under Mac OS X 10.4.7 Q: Did the page load? Yes Q: Did the page title change to reflect that particular example? Yes: 1blu.pdb Q: Did the list and textbox areas load? Yest Q: Did the model load? Yes Q: Did the data under

Re: [Jmol-users] new documentation popup method

2006-09-06 Thread rgb
On Wed, September 6, 2006 8:32 am, Bob Hanson wrote: Jmol users: Please test the new documentation pop-up examples. Everything seemed to go OK with FF 1.5.0.6 on OSX 10.3.9 Rich - Using Tomcat but need to do more? Need

Re: [Jmol-users] jmol and space groups

2006-09-06 Thread rgb
On Tue, September 5, 2006 4:35 pm, Bob Hanson wrote: In response to requests for Jmol to be able to visualize a wider range of crystallographic data sets, with the help of Peter and Judith Murray-Rust and Syd Hall, I've made a preliminary implementation of space group name analysis in Jmol

Re: [Jmol-users] jmol and space groups

2006-09-06 Thread Bob Hanson
[EMAIL PROTECTED] wrote: On Tue, September 5, 2006 4:35 pm, Bob Hanson wrote: In response to requests for Jmol to be able to visualize a wider range of crystallographic data sets, with the help of Peter and Judith Murray-Rust and Syd Hall, I've made a preliminary implementation of space

Re: [Jmol-users] new documentation popup method

2006-09-06 Thread Philip Bays
Bob:Everything seems to work for me on Safari except the last link.  It may work, and certainly reports that it does in the data under the applet, but I am not sure anything is happening in the applet -- at least not that I see.PhilOn Sep 6, 2006, at 8:32 AM, Bob Hanson wrote:Jmol users:Please

[Jmol-users] Recent MolVis articles in BAMBEd

2006-09-06 Thread Eric Martz
The journal Biochemical and Molecular Biology Education (BAMBEd, http://www.bambed.org/ www required) continues to grow and thrive under the editorship of Don and Judy Voet. The May/June issue includes A new three-dimensional educational model kit for building DNA and RNA molecules:

[Jmol-users] Recent MolVis articles in BAMBEd

2006-09-06 Thread Annemarie Honegger
Dear EricThese model kits are from the CBME (Centro de Biotechnologia Molecular Estructural)A colleague brought me their excellent "Protein Folder" modeling kit from Brazil, a really neat modeling set for building cartoon-type structural representations. Very clearinstructions for building a