[Jmol-users] Wiki link broken and secret book

2008-01-30 Thread Noel O'Boyle
(1) The link to the wiki on the front page of Jmol is broken (2) Why isn't there something on the front page saying Jmol book now available? It seems like the Jmol book is a secret. I think that having a book available is a big vote in favour of any project, especially an open source one, and can

[Jmol-users] trace on connects also ligands in a strange way

2008-01-30 Thread Raphael A. Bauer
hi jmol list, if i am issuing the script: background white; select all; wireframe off; backbone off; spacefill off; trace on; on a protein with ligands bound to it. unfortunately i am getting the normal trace plus a trace that seems to connect all ligands (looks like a giant signature of a

Re: [Jmol-users] un/loading the jmol Applet

2008-01-30 Thread josh
Hi Eric, thanks for you reply and suggestions. Have you ever seen this java memory problem? I haven't seen this yet, but I typically only load or unload once or twice for testing. Is anybody besides me seeing these java crashes with security exceptions due to java accessing it's own cache?

[Jmol-users] Sync centering bug

2008-01-30 Thread Eric Martz
At 1/30/08, you wrote: 1. In addition to the controls you already have below the Jmols, a checkbox to synchronize mouse-directed rotations and zooms would be cool. See sync in the manual. I use sync * on and sync * off (* = all Jmols) together with set syncScript false; set syncMouse

Re: [Jmol-users] trace on connects also ligands in a strange way

2008-01-30 Thread Angel Herráez
Raphael A. Bauer wrote: background white; select all; wireframe off; backbone off; spacefill off; trace on; on a protein with ligands bound to it. unfortunately i am getting the normal trace plus a trace that seems to connect all ligands (looks like a giant signature of a MD). That's

Re: [Jmol-users] Wiki link broken and secret book

2008-01-30 Thread Angel Herráez
Hi Noel (1) The link to the wiki on the front page of Jmol is broken Do you mean the link at the top-right menu? It works for me right now. The wiki server gives trouble some times, may be that. (2) Why isn't there something on the front page saying Jmol book now available? It seems like

Re: [Jmol-users] Wiki link broken and secret book

2008-01-30 Thread Nicolas Vervelle
Noel O'Boyle a écrit : On 30/01/2008, Nicolas Vervelle [EMAIL PROTECTED] wrote: Noel O'Boyle a écrit : (1) The link to the wiki on the front page of Jmol is broken What link ? It's working for me (http://wiki.jmol.org) Yes, that's the link. It's working now for me

Re: [Jmol-users] Wiki link broken and secret book

2008-01-30 Thread Angel Herráez
On 31 Jan 2008 at 0:03, Nicolas Vervelle wrote: I know it doesn't work from some places (like my office), because the Wiki is not on the usual HTTP port (80), but on port 81. Depending on the security of the place you are connecting from, it may not work Nico, would it help if we change

Re: [Jmol-users] Wiki link broken and secret book

2008-01-30 Thread Nicolas Vervelle
Angel Herrez a crit: On 31 Jan 2008 at 0:03, Nicolas Vervelle wrote: I know it doesn't work from some places (like my office), because the Wiki is not on the usual HTTP port (80), but on port 81. Depending on the security of the place you are connecting from, it may not work