Re: [Jmol-users] differences in renderization

2008-03-09 Thread Sérgio Ceroni da Silva
Bob Hanson wrote: Sérgio Ceroni da Silva wrote: Dear Jmol users, I've noticed some differences in renderization between the applet and the application and I'm not sure if it is a bug or something related to the pdb file. This can be seen in 2NUU, using rocket or cartoon, around two beta-she

Re: [Jmol-users] differences in renderization

2008-03-09 Thread Bob Hanson
Sérgio Ceroni da Silva wrote: >Dear Jmol users, I've noticed some differences in renderization between >the applet and the application and I'm not sure if it is a bug or >something related to the pdb file. This can be seen in 2NUU, using >rocket or cartoon, around two beta-sheets (tyr51, chains

Re: [Jmol-users] symmetry operations on pdb file

2008-03-09 Thread Angel Herráez
Bob Hanson wrote: > Why not just load the model as a full unit cell: > > load .pdb {1 1 1} > > No? Yes! I was not aware that could be done with PDB. I was misguided by sym.htm, which just mentions CIF. I'm still finding the way to display just the copies I want, but "symop" seems to be

Re: [Jmol-users] Java on iPhone family: Significance for Jmol?

2008-03-09 Thread Rzepa, Henry
> >For the Jmol application, I have some doubts because the application will >probably have to be distributed through App Store. >If I understand correctly, there's an annual fee for distributing an >application (99$ ?) > >Nico Only if one charges for the product? But understand that the Jav

[Jmol-users] differences in renderization

2008-03-09 Thread Sérgio Ceroni da Silva
Dear Jmol users, I've noticed some differences in renderization between the applet and the application and I'm not sure if it is a bug or something related to the pdb file. This can be seen in 2NUU, using rocket or cartoon, around two beta-sheets (tyr51, chains G, H, I). Regards Sérgio -- Dr.

Re: [Jmol-users] duplicates and rotateSelected

2008-03-09 Thread Bob Hanson
this is fixed for 11.5.14 and 11.4.RC10. Mauricio Carrillo Tripp wrote: > I'm having > trouble when rotating them. I'm using the rotateSelected > command with the AXISANGLE option, and although > the duplicate is the only one that rotates, it does so > around what it seems to be a different axis