(I'm suspecting it might have been a corrupted download now though. What
happened to the links? I can't seem to redownload, it says the St. Olaf
webserver is unavailable)
2014-08-13 10:40 GMT+01:00 Simone Sturniolo :
> Version does not work on MagresView - the error messages vary
Version does not work on MagresView - the error messages vary from browser
to browser. Chromium gives me a
Jmol._Canvas2D (Jmol) "mainJmol"[x]
l/j2s/core/package.js
l/j2s/core/package.js
-- required by w3c script failed
error, while on Firefox I get two alerts when loading a file:
Alert
Thanks - the Info variable for some reason didn't work (even when I tried
"en", "en_GB" and "en_US"), but "set languageTranslation OFF" did the trick
for my purposes!
Thanks anyway!
Cheers,
Simone
2014-06-16 18:05 GMT+01:00 Angel Herráez :
> Oh, then also from the Info variable, but you just n
Hi all,
does anyone know how to force JSMol to use a certain language instead of
the system wide default? I tried setting the "language" option to
language: "English",
in the Info object passed to the applet creation method but it didn't work.
Any other ideas?
Cheers,
Simone
--
__
Nah, now JSmol enters into some infinite or very long loop when loading the
file and Firefox crashes (it happens on the line Script:
file:///home/wml08325/Desktop/MagresViewHg/MagresView_1_2bis/jsmol/JSmol.min.js:331).
Simone
2014/1/16 Robert Hanson
> Right, the weak link now is surface creati
I've been trying my page today with both Java and JS versions of Jmol.
While JS of course works fine, I get a weird problem with the Java version
- the applet loads fine, but I can't seem to load files into it. Anyone has
experience with this, or knows if it could be related with the changes in
sec
Dear Eric,
I did exactly that with my MagresView. I think it's going to be required
starting January 2014, so in a few days, but I think Robert will know
better on the topic of course.
Simone
2013/12/28 Eric Martz
> When running the unsigned Jmol applet under Java 1.7.0_45, I have
> seen a re
Congrats Bob! I'll try to make the best of this - especially the changes to
the Java applet!
Cheers,
Simone
2013/12/5 Greg Edwards
> Bob,
>
> Thanks. This has been said before but it can't be said too often. Thanks
> for all the work you put into this and the friendly spirit in which you
> ta
Thanks a lot! Did this happen two weeks ago? Because that's when we started
having trouble as Firefox randomly stopped working with JMol at the CASTEP
workshop... it was driving me mad. Is there any way to do this change
through Javascript that you know of? I fear not, but if there is
something...
This idea picks my interest, though for my application I'd like something
slightly more functional (with capabilities to draw solids, lines and text,
beyond the simple molecular plotting).
A question: is it possible that such a JSMol "lite" version would also
render faster? Or should we expect more
I think the point here is that CO2 has simple sp hybridization, not sp2...
2013/3/15 Pshemak Maslak
> On 3/11/2013 2:18 PM, Robert Hanson wrote:
>
> Since when are they sp2 ? ;)
>
> Since freshman chemistry covered hybridization?
>
> I am guessing that there is no simple fix...
>
> PM
>
>
>
>
I can add something to that - local file access with HTML5 will work with
Firefox and Opera, could not work with some versions of Chrome, which has a
weird security policy, if the html file is local itself. In the latter
case, it can be fixed by running Chrome from command line with the option
--al
n Fri, Feb 22, 2013 at 6:46 AM, Simone Sturniolo <
> simonesturni...@gmail.com> wrote:
>
>> Tried that. Every other order either increases the number of error
>> messages, or leaves the situation unchanged.
>>
>>
>> 2013/2/22 Paul Pillot
>>
I know ^^, I sent another email right after that, sorry for the mistake!
2013/2/22 N David Brown
> You didn't list the error :-)
>
>
> On 22 February 2013 15:07, Simone Sturniolo wrote:
>
>> Ok, the error message came up again, it's:
>>
>>
>>
Sorry, it seems like the mail was sent by mistake. The error message:
TypeError: b._getElement(...).style is undefined
...!c&&(this._isInfoVisible=c,this._infoObject?this._infoObject._showInfo(c):b._get...
JSmol.min.js (line 236)
2013/2/22 Simone Sturniolo
> Ok, the error mess
Ok, the error message came up again, it's:
2013/2/22 Simone Sturniolo
> I used the new package and, as suggested, included only the JSmol.min.js
> script file. The result is a very similar error message, which now I can't
> manage to reproduce because Firefox keeps simply g
I used the new package and, as suggested, included only the JSmol.min.js
script file. The result is a very similar error message, which now I can't
manage to reproduce because Firefox keeps simply getting stuck when I try
to load the page. I also lose all jQuery UI functionality that I had
implemen
Hello Angel,
1) I downloaded the version found on sourceforge as linked on the wiki, and
I can't find JSmol.min.js, which I wanted to include at first
2) that could be the reason... I checked a few pages too though. I didn't
find any notable mistakes in my code, but of course, I might be wrong
3
; Paul
>
> Le 22 févr. 2013 à 12:43, Simone Sturniolo a écrit :
>
> Hi,
>
> I'm trying to switch my JMol applet web page to JSMol - mainly to avoid
> all the problems related with ever increasing restrictive security policies
> for Java. I put all the main JSMol files in
Hi,
I'm trying to switch my JMol applet web page to JSMol - mainly to avoid all
the problems related with ever increasing restrictive security policies for
Java. I put all the main JSMol files in a folder, j2s in a subfolder,
loaded the scripts:
ay to represent them in JMol, unless you turn your
magnetic shielding information into "fake" data for the thermal ellipsoid,
which would be quite a ugly workaround.
Best regards,
Simone Sturniolo
2013/2/19 Dominik Greim
> Hi everybody,
> I wanted to know if there's a way
No, I'm sorry, it's a local file. It's still incomplete.
2013/2/6 Angel Herráez
> Simone, do you have a url we can test?
>
>
>
>
> --
> Free Next-Gen Firewall Hardware Offer
> Buy your Sophos next-gen firewall before th
Nope. That is one of the things that confuses me.
2013/2/6 N David Brown
> Are any errors reported in the JavaScript console?
>
> David
>
>
> On 6 February 2013 12:21, Simone Sturniolo wrote:
>
>> Greetings,
>>
>> I am experiencing a weird problem. I h
Greetings,
I am experiencing a weird problem. I have been developing a page embedding
the JMol Java applet with JSO interface, and it worked fine on all the
browsers I tested it on - Firefox, Chrome, and Opera. After a while of not
testing it anymore on Opera, I tried it again and it doesn't work
Well, for now it works, but I am not running on the same system where I
observed the bug first, so I won't be able to give a good answer for a
while.
2013/1/28 Robert Hanson
>
>
>
> On Mon, Jan 28, 2013 at 1:12 PM, Simone Sturniolo <
> simonesturni...@gmail.com>
Hi,
I've stumbled upon a peculiar behaviour in the JMol applet. I was testing
with the pickCallback with a simple function which only shows a dialog with
the arguments passed to the callback printed in it whenever one picks an
atom. This worked fine on Chrome. The same, however, did not happen on
hey can be given any sort of label, including none (just a
> space character). They are very light-weight.
>
>
>
> On Mon, Dec 17, 2012 at 10:32 AM, Simone Sturniolo <
> simonesturni...@gmail.com> wrote:
>
>> Not especially important... for now I'm using the cylind
;
> On Mon, Dec 17, 2012 at 8:21 AM, Simone Sturniolo <
> simonesturni...@gmail.com> wrote:
>
>> Hello everyone,
>>
>> maybe it's just me not being able to find this in the documentation,
>> but... is there a way to draw 2D lines (lines that are not th
Hello everyone,
maybe it's just me not being able to find this in the documentation, but...
is there a way to draw 2D lines (lines that are not thin cylinders) in Jmol
freely, without them being measures or H-bonds?
Thank you very much.
Simone
--
___
Nuovo indirizzo e-mail:
simones
Sorry, forgot to attach the file. Here it is.
Simone
--
___
Nuovo indirizzo e-mail:
simonesturni...@gmail.com
http://www.xml-cml.org/schema";
xsi:schemaLocation="http://www.xml-cml.org/schema../../schema.xsd";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xmlns:ccml="http:
Hello,
I've been playing around with the various XML file readers in the latest
update of Jmol available on SourceForge, and I found what could be a bug. I
tried opening the attached file, which opens just fine in older Jmol
versions. In the last one, though, it gives off a
Error reading XML: nul
Oh, you're right, thank you very much. I took it for granted that it would
be a Javascript function and didn't think about looking into actual
scripting. Sorry for that.
Simone
2012/11/29 Angel Herráez
> Simone, the command is "load data"
> follow that in the documentation
>
>
>
> ---
Hello everyone,
I'm developing a webpage embedding the JMol applet using JSO. I would like
to be able to load molecular models stored in strings - created either via
scripting, or by loading user files. I can't seem however to find a JSO
equivalent for the old jslibrary "jmolLoadInline" function.
I have just started working with JSO, but I can tell you at least that you
can replace the jmol script ("model NEXT") with a Javascript function. You
only have to pass an array [, , ...]
to the jmolButton function. If your function does simple operations which
can be coded in Javascript, that would
26, 2012 at 9:28 AM, Robert Hanson wrote:
>
>>
>>
>> On Mon, Nov 26, 2012 at 6:00 AM, Simone Sturniolo <
>> simonesturni...@gmail.com> wrote:
>>
>>> ellipsoid test axes {1.0 0.0 0.0} {0.0 0.5 0.0} {0.0 0.0 0.5}
>>
>>
>> Ah, OK. I may have mi
0 0.5}
and I still get a ball).
Simone
2012/11/26 Robert Hanson
> send me the offending file, please. I was sure I fixed that.
>
>
>
> On Mon, Nov 26, 2012 at 5:34 AM, Simone Sturniolo <
> simonesturni...@gmail.com> wrote:
>
>> Hi,
>>
>> I tried down
Hi,
I tried downloading the new 13.1.9 release from Sourceforge, and even
compiling the source code for 13.1.10_dev, but I still have bugs with
ellipsoids. Now, instead of a dot, I see a large square when I try them. It
seems odd to me that it could be system-specific, but just to stay on the
safe
me reason?
Simone
2012/11/23 Robert Hanson
> color ellipsoids translucent
>
>
>
>
> On Thu, Nov 22, 2012 at 11:30 AM, Simone Sturniolo <
> simonesturni...@gmail.com> wrote:
>
>> Hi everyone,
>>
>> I've been working with JMol version 13.1
Hi everyone,
I've been working with JMol version 13.1.9_dev, especially with the
console, for a scripting project. In particular, I've been playing around
with ellipsoids. I found out that there is some weird behaviour on their
part:
1) in versions 13.1.9 and 13.1.8, ellipsoids created with the c
Ah, good one! Thanks.
Now that I check, atomno is one of the [atom properties], so it's an
analogous syntax to some other expressions I've used already. The @
shortcut however is really convenient.
2012/11/22 Angel Herráez
> Yes, welcome to Jmol community
>
> Ah, you can also use the atom numb
Oh, good to know. Currently I am working on 13.1.9_dev, so it's a new bug.
I am interested into using this notation because it's very regular and
seems more practical for scripting than, say, using the full chemical name.
By the way, hello everyone. I'm a new one but I'm going to hang around on
th
I support this idea. Also, I remember reading somewhere that selectionHalos
is supposed to be set ON by default when a file is loaded - which in my
case actually does not happen when I load from the scripting console.
Also on the topic of selection & scripting console (but otherwise slightly
off-t
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