That looks good Bob. I understand that if the atoms are charged according
to the CIF file, Jmol will use percentage bounds of the sum of the pairs
of ionic radii, either those hard coded into Jmol or those input according
to your previous extension. If the atoms are not charged, the bonding
radius
Right. If the user has specified
{xxx}.ionic = .
then those values will be used.
On Thu, Mar 4, 2010 at 10:33 AM, Alan Hewat wrote:
> That looks good Bob. I understand that if the atoms are charged according
> to the CIF file, Jmol will use percentage bounds of the sum of the pairs
> of i
Hello,
I'm using the following start up script to unbind and bind CTRL operations:
unbind 'CTRL-LEFT'; bind 'CTRL-LEFT' 'rotateSelected Y
_DELTAX;rotateSelected X _DELTAY;';unbind 'CTRL-RIGHT'; bind 'CTRL-RIGHT'
'translateSelected {_DELTAX/100 _DELTAY/-100 0};'
Under Windows, the script works wi
Otis, in case you are interested, here is what Jmol does with the standard
mouse click motion, in this order though not using exactly this command:
rotate X @{180.0 * _deltaY / _Height * mouseDragFactor};
rotate Y @{180.0 * _deltaX / _Width * mouseDragFactor};
But, right, there must be something
where's the page?
On Tue, Mar 2, 2010 at 11:50 PM, Otis Rothenberger wrote:
> Bob,
>
> Here is what's not working for me:
>
> jmolApplet(450, "load /models/alkane!ethane_mm.mol;moveto 0 1 1 1 66;hover
> off;frank off;set PickCallBack 'processPick';javascript appletLoadedA()",
> "01")
>
> MSIE pic
Bob-
Very interested! Thanks.
How about translate?
Otis
On Thu, Mar 4, 2010 at 1:53 PM, Robert Hanson wrote:
> Otis, in case you are interested, here is what Jmol does with the standard
> mouse click motion, in this order though not using exactly this command:
>
> rotate X @{180.0 * _deltaY /
Bob,
I moved the bind/unbind directly into the Jmol load script. The only thing
the javascript function does now is enter some field information after the
applet loads, at least that's the intent. Moving the bind/unbind directly
into the script solved the bind/unbind problem in MSIE, but MSIE is n
Otis, there's something wrong with your JavaScript. MSIE 8.0.7100.0 on my
Windows7 machine works fine with a simple test. The page is simply
http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
If you get an alert "test" when the page loads, that's Jmol sending
javascript back. It worked fine
When I go to your page and execute
javascript:alert(
>
> appletLoadedA)
>
> That reports a function with Firefox but no function with MSIE. Is that
> what you observe as well?
>
> So something in your code is not working.
>
second part is what I wanted to say.
On Thu, Mar 4, 2010 at 2:40 PM,
I am working on a student
exercise on lysozyme, file 2LYZ, in which I want the students to see
the locations of the helices and sheets in the overall structure.
To get a view of the beta sheet with clearly visibile H-bonds, I type
wireframe 100;spacefill off
restrict sheet; hbonds calculate;
Otis,
This issue may be that the system binds cntrl-left = right mouse
button. This is because until recently most macs came with a one
button mouse. I always replaced it with a two-button/scroll-wheel
mouse:). But on my mice the cntl-left still brings up the context
sensitive rig
This is the second time I
have sent a message to the Jmol users list, and both times the message
appeared without the text but with the message "An HTML attachment was
scrubbed..."
There was no attachment, HTML or otherwise, to my e-mail, and I don't
understand why this is happening.
Jeff Coh
I am working on a student exercise on lysozyme, file 2LYZ, in which I
want the students to see the locations of the helices and sheets in the
overall structure. I am using Jmol 11.8.18.
To get a view of the beta sheet with clearly visibile H-bonds, I type
wireframe 100;spacefill off
restrict sh
Bob and Jonathan-
There seems to be agreement that I need to change the key combination for
the Mac. I'll have my Mac colleague at USM try some changes in the morning.
Thanks for the advice.
On a related issue. I really tried to get this on my own, but I'm ready to
throw in the towel! How do you
I brought this subject up as an append in an earlier email chain. I should
have started a new chain, so this is it.
I queried the script behind Jmol's native click/drag translate. Whatever it
is, I now see that it's captured in _navTranslate. I'm still curious about
the script behind this, but my
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