Dear Bob,
The following 2 commands crash Jmol 12.0.11:
load 1dlh.pdb.gz
color structure
The crash occurs with 1dlh.pdb.gz or 1dlh.pdb (as received from the PDB)
but NOT with e.g. 1d66.pdb, 1pgb.pdb.gz, 2vaa.pdb.gz.
So it seems to be related to something specific in 1dlh.pdb.
Here's a clue: the
Jmol users:
We need a suitable color for carbohydrate that meshes well with other
STRUCTURE colors such as these:
http://www.umass.edu/molvis/drums/codes.html
Thanks,
Bob
On Sun, Sep 5, 2010 at 1:48 PM, Eric Martz wrote:
> Dear Bob,
>
> The following 2 commands crash Jmol 12.0.11:
>
> load 1d
yeah, it's easy. It will be
load "xxx.spartan" filter "charge=ESP"
...ok, that's done for Jmol 12.1.10.
Bob
On Sat, Sep 4, 2010 at 11:17 PM, Otis Rothenberger wrote:
> Bob,
>
> I figured out how to pass the set of partial charges to a model, but
> this called my attention to another point. Wh
Wait, no, it's:
load "xxx.spartan" filter "ESPCHARGES"
On Sun, Sep 5, 2010 at 8:34 PM, Robert Hanson wrote:
> yeah, it's easy. It will be
>
> load "xxx.spartan" filter "charge=ESP"
>
> ...ok, that's done for Jmol 12.1.10.
>
> Bob
>
>
> On Sat, Sep 4, 2010 at 11:17 PM, Otis Rothenberger
> wr
On Sat, Sep 4, 2010 at 9:02 PM, Otis Rothenberger wrote:
> Bob,
>
> The image file (gif) loads directly to any page using an image tag with the
> Resolver's url as the image src. Although it's dynamically generated from
> the query string, ii's simply a gif image. Anyone can load it. No problem.
thanks. I've added direct pointers -- will upload soon.
On Mon, Aug 30, 2010 at 5:22 PM, Eric Martz wrote:
> Dear Bob,
>
> The Dots section of the manual does not refer to "set (misc)", but
> that contains many of the Dots settings.
>
> In addition to listing "set (misc)" under "See also", I thin
see http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol_12.zip
On Sun, Sep 5, 2010 at 8:34 PM, Robert Hanson wrote:
> Wait, no, it's:
>
>
> load "xxx.spartan" filter "ESPCHARGES"
>
>
>
>
> On Sun, Sep 5, 2010 at 8:34 PM, Robert Hanson wrote:
>
>> yeah, it's easy. It will be
>>
>> load "xxx.s
http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol_12.zip
On Sun, Sep 5, 2010 at 1:48 PM, Eric Martz wrote:
> Dear Bob,
>
> The following 2 commands crash Jmol 12.0.11:
>
> load 1dlh.pdb.gz
> color structure
>
> The crash occurs with 1dlh.pdb.gz or 1dlh.pdb (as received from the PDB)
> but NOT
http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol_12.zip
On Sat, Sep 4, 2010 at 4:20 PM, Eric Martz wrote:
> In 11.6, reset did not stop spinning. In 12.0.11 it does.
>
> I often want to reset the orientation and zoom, e.g. as part of
> playing back the "show orientation" report. My present s
Hmm, might I suggest an orange-ish color, maybe something akin to #ffa500?
Orange is about the farthest color away from the colors that already exist
in that scheme right now. My second place vote goes to a deep navy blue.
Now for the real reason for my e-mail: I want to make sure I understand
"wr
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