On 02/01/2012 05:47 PM, Yihui Xie wrote:
I'm pretty confident with this one. It does not have specific
requirements on R versions, and users do not have to upgrade R.
If you and JMarc agree, it can go into 2.0.3. I know nothing about this
stuff.
Richard
Regards,
Yihui
--
Yihui
Le 01/02/2012 20:16, Yihui Xie a écrit :
The patch is pretty simple: http://www.lyx.org/trac/ticket/8019
I removed Sweave.sty from texmf-local, so that LyX cannot find it that way,
applied the patch, and the Sweave manual compiles now fine from the Help menu.
No failure because of write
On 02/01/2012 05:47 PM, Yihui Xie wrote:
I'm pretty confident with this one. It does not have specific
requirements on R versions, and users do not have to upgrade R.
If you and JMarc agree, it can go into 2.0.3. I know nothing about this
stuff.
Richard
Regards,
Yihui
--
Yihui
Le 01/02/2012 20:16, Yihui Xie a écrit :
The patch is pretty simple: http://www.lyx.org/trac/ticket/8019
I removed Sweave.sty from texmf-local, so that LyX cannot find it that way,
applied the patch, and the Sweave manual compiles now fine from the Help menu.
No failure because of write
Hello,
I took a look to the new specific manual describing sweave with the latest
2.0.3svn. The pdf export fails on an Rscript error:
cite
Running: Rscript --verbose --no-save --no-restore
/usr/local/share/lyx-2.0.3svn/scripts/lyxsweave.R
/tmp/lyx_tmpdir.T21839/lyx_tmpbuf2/sweave.Rnw
I guess you compiled the document under
/usr/local/share/lyx-2.0.3svn/examples/, right?
I believe the problem is that R has no write privilege to that
directory, so the default pdf() device cannot be started there. You
can copy sweave.lyx to a directory where you have write privilege, and
see if
On Wed, Feb 1, 2012 at 5:15 PM, Yihui Xie x...@yihui.name wrote:
I guess you compiled the document under
/usr/local/share/lyx-2.0.3svn/examples/, right?
I believe the problem is that R has no write privilege to that
directory, so the default pdf() device cannot be started there. You
can copy
You are right (ideally), but this is a long-lasting annoying problem
with R's default graphical device which is pdf() in the
non-interactive session. Unfortunately it has to create a file under
the current working directory (usually named Rplots.pdf). I requested
a true null device which does not
Le 01/02/2012 17:15, Yihui Xie a écrit :
I guess you compiled the document under
/usr/local/share/lyx-2.0.3svn/examples/, right?
I believe the problem is that R has no write privilege to that
directory, so the default pdf() device cannot be started there. You
can copy sweave.lyx to a directory
No, I do not think that is your problem :) See my second reply above.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
2012/2/1 Jean-Pierre Chrétien
Le 01/02/2012 17:15, Yihui Xie a écrit :
I guess you compiled the document under
/usr/local/share/lyx-2.0.3svn/examples/, right?
I believe the problem is that R has no write privilege to that
directory, so the default pdf() device cannot be started there. You
can copy sweave.lyx to a directory
That seems like a bug of Debian; R should be able to find Sweave.sty with
file.path(R.home(share), texmf, tex, latex, Sweave.sty)
[1] /usr/share/R/share/texmf/tex/latex/Sweave.sty
I'm using Ubuntu and R can find Sweave.sty correctly.
If possible, I strongly recommend you update R to the latest
I think so. If you add a CRAN mirror to your software repository,
Debian knows how to solve the dependencies. There is a Debian
maintainer who has been working on compiling R and some R packages to
Debian packages.
The versions of LyX and TeXLive often have a long time lag in
Debian/Ubuntu, but R
Le 01/02/2012 18:20, Yihui Xie a écrit :
If possible, I strongly recommend you update R to the latest 2.14.1
(it is pretty easy to update if you set a CRAN mirror; see
instructions at http://cran.r-project.org/bin/linux/debian/). There
have been many changes in Sweave since 2.11.
Sure, I can
On Wed, Feb 1, 2012 at 5:29 PM, Yihui Xie x...@yihui.name wrote:
You are right (ideally), but this is a long-lasting annoying problem
with R's default graphical device which is pdf() in the
non-interactive session. Unfortunately it has to create a file under
the current working directory
The patch is pretty simple: http://www.lyx.org/trac/ticket/8019
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Wed, Feb 1, 2012 at 12:53 PM, Liviu Andronic
Le 01/02/12 20:16, Yihui Xie a écrit :
The patch is pretty simple: http://www.lyx.org/trac/ticket/8019
It looks like a reasnable thing to do, if it does what I think it does.
How confident are you with this patch? Does it rely only on documented
behaviour, assumed to be present in earlier R
Le 01/02/12 18:20, Yihui Xie a écrit :
That seems like a bug of Debian; R should be able to find Sweave.sty with
file.path(R.home(share), texmf, tex, latex, Sweave.sty)
[1] /usr/share/R/share/texmf/tex/latex/Sweave.sty
I'm using Ubuntu and R can find Sweave.sty correctly.
If possible, I
I'm pretty confident with this one. It does not have specific
requirements on R versions, and users do not have to upgrade R.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
Yes, that would be ideal. I will update the patch to reflect this
issue. I do not remember in which version R moved Sweave.sty from
texmf to texmf/tex/latex, so let's search both places.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of
Hello,
I took a look to the new specific manual describing sweave with the latest
2.0.3svn. The pdf export fails on an Rscript error:
Running: Rscript --verbose --no-save --no-restore
"/usr/local/share/lyx-2.0.3svn/scripts/lyxsweave.R"
"/tmp/lyx_tmpdir.T21839/lyx_tmpbuf2/""sweave.Rnw"
I guess you compiled the document under
/usr/local/share/lyx-2.0.3svn/examples/, right?
I believe the problem is that R has no write privilege to that
directory, so the default pdf() device cannot be started there. You
can copy sweave.lyx to a directory where you have write privilege, and
see if
On Wed, Feb 1, 2012 at 5:15 PM, Yihui Xie wrote:
> I guess you compiled the document under
> /usr/local/share/lyx-2.0.3svn/examples/, right?
>
> I believe the problem is that R has no write privilege to that
> directory, so the default pdf() device cannot be started there. You
>
You are right (ideally), but this is a long-lasting annoying problem
with R's default graphical device which is pdf() in the
non-interactive session. Unfortunately it has to create a file under
the current working directory (usually named Rplots.pdf). I requested
a true null device which does not
Le 01/02/2012 17:15, Yihui Xie a écrit :
I guess you compiled the document under
/usr/local/share/lyx-2.0.3svn/examples/, right?
I believe the problem is that R has no write privilege to that
directory, so the default pdf() device cannot be started there. You
can copy sweave.lyx to a directory
No, I do not think that is your problem :) See my second reply above.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
2012/2/1 Jean-Pierre Chrétien
Le 01/02/2012 17:15, Yihui Xie a écrit :
I guess you compiled the document under
/usr/local/share/lyx-2.0.3svn/examples/, right?
I believe the problem is that R has no write privilege to that
directory, so the default pdf() device cannot be started there. You
can copy sweave.lyx to a directory
That seems like a bug of Debian; R should be able to find Sweave.sty with
> file.path(R.home("share"), "texmf", "tex", "latex", "Sweave.sty")
[1] "/usr/share/R/share/texmf/tex/latex/Sweave.sty"
I'm using Ubuntu and R can find Sweave.sty correctly.
If possible, I strongly recommend you update R
I think so. If you add a CRAN mirror to your software repository,
Debian knows how to solve the dependencies. There is a Debian
maintainer who has been working on compiling R and some R packages to
Debian packages.
The versions of LyX and TeXLive often have a long time lag in
Debian/Ubuntu, but R
Le 01/02/2012 18:20, Yihui Xie a écrit :
If possible, I strongly recommend you update R to the latest 2.14.1
(it is pretty easy to update if you set a CRAN mirror; see
instructions at http://cran.r-project.org/bin/linux/debian/). There
have been many changes in Sweave since 2.11.
Sure, I can
On Wed, Feb 1, 2012 at 5:29 PM, Yihui Xie wrote:
> You are right (ideally), but this is a long-lasting annoying problem
> with R's default graphical device which is pdf() in the
> non-interactive session. Unfortunately it has to create a file under
> the current working directory
The patch is pretty simple: http://www.lyx.org/trac/ticket/8019
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Wed, Feb 1, 2012 at 12:53 PM, Liviu Andronic
Le 01/02/12 20:16, Yihui Xie a écrit :
The patch is pretty simple: http://www.lyx.org/trac/ticket/8019
It looks like a reasnable thing to do, if it does what I think it does.
How confident are you with this patch? Does it rely only on documented
behaviour, assumed to be present in earlier R
Le 01/02/12 18:20, Yihui Xie a écrit :
That seems like a bug of Debian; R should be able to find Sweave.sty with
file.path(R.home("share"), "texmf", "tex", "latex", "Sweave.sty")
[1] "/usr/share/R/share/texmf/tex/latex/Sweave.sty"
I'm using Ubuntu and R can find Sweave.sty correctly.
If
I'm pretty confident with this one. It does not have specific
requirements on R versions, and users do not have to upgrade R.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
Yes, that would be ideal. I will update the patch to reflect this
issue. I do not remember in which version R moved Sweave.sty from
texmf to texmf/tex/latex, so let's search both places.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of
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