Re: Biblatex issues [RESOLVED]
On Thu, 25 Mar 2021, Rich Shepard wrote: Well, this last one stymies me. The displayed LyX error is attached. The jabref.bib file entry follows: Paul, Mea culpa! I removed the duplicate Millard1988 from the JabRef display, but not from the .bib text file I had open. Realizing the text file had duplicate entries I deleted one, saved the .bib file and all compilation errors went away. My bad :-( Regards, Rich -- lyx-users mailing list lyx-users@lists.lyx.org http://lists.lyx.org/mailman/listinfo/lyx-users
Re: Biblatex issues
On Thu, 25 Mar 2021, Rich Shepard wrote:
I'm getting different errors in the whole file. Will explore that error
log before asking for fresh eyeballs.
Paul,
Well, this last one stymies me. The displayed LyX error is attached. The
jabref.bib file entry follows:
--8<-
@article{Junk1980,
abstract = {Selected organic components in samples collected from
monitoring wells
and from surface water are shown to follow definite areal, vertical,
and temporal trends in concentrations. Atrazine
(2-chloro-4[ethylamino]-6-[isopropylamino]-s-triazine),
alachlor (2-chloro-2',6'-diethyl-N-[methoxymethyl]acetanilide) and
dieldrin
(1,2,3,4,10,10-hexachloro-exo-6,7-epoxy-1,4.4a,5,6,7.8.8a-octahydro-1,4-endo,exo5,8,dimethanonaphthalene)
were measured in 64, 35, and 35 water samples, respectively. The
atrazine amounts ranged from < 0.01 to 88 ug/liter. Peak concentrations
were observed in shallow well water downgradient from irrigated fields
at the end of the irrigation season. The areal and vertical
distributions
of atrazine are closely associated with those of nitrate-nitrogen
(NO3-N), which was measured as an indicator of deep percolation from
irrigated croplands. However, temporal variations in atrazine
concentrations
suggest that it is a non-conservative constituent of ground water.
Alachlor and dieldrin amounts were extremely low, being less than
0.1 ug/liter in all but one water sample which was taken from a well
located in an excessively well-drained area. Dissolved organic carbon
(DOC) was measured in 95 water samples and the amounts ranged from
0.2 to 4.8 mg/liter. Maximum occurred in shallow wells and there
were no seasonal assocation with either atrazine or NO3-N. The DOC
data suggest percolation from the unsaturated zone and partial removal
from solution during vertical transport through the saturated zone.},
author = {Junk, G.A. and Spalding, R.F. and Richard, J.J.},
journal = {Journal of Environmental Quality},
keywords = {pesticides, ground water, DOC, water quality, atrazine,
alachlor, nitrate nitrogen, suface water, organic},
number = {3},
pages = {479--483},
title = {{Areal, vertical, and temporal differences in ground water
chemistry: II. Organic constituents}},
volume = {9},
year = {1980}
} ->8
I replaced the n-dash in the pages which seems to be the problem but it's
not making a difference. Perhaps I need to close jabref and lyx and try
again. If you see something I've missed please let me know.
--
lyx-users mailing list
lyx-users@lists.lyx.org
http://lists.lyx.org/mailman/listinfo/lyx-users
Re: Parent-child book questions
On Thu, 25 Mar 2021, Richard Kimberly Heck wrote: That button is for finding a *layout file* other than the ones that ship with LyX. You need to click the button "Select default master document" and then hit "Browse". Riki, Ah, I missed that. The best way to do this would be to define a new page style and then use it. This is not something for which LyX has full native support. Have a look at the documentation for the fancyhdr package. I've used fancyhdr before -- a long time ago. I think that KOMA-Script also has some solutions for this. I'll also look at the LaTeX guide and see if there's a different package that would do it. Thanks for the directions, Rich -- lyx-users mailing list lyx-users@lists.lyx.org http://lists.lyx.org/mailman/listinfo/lyx-users
Re: Parent-child book questions
On 3/25/21 3:35 PM, Rich Shepard wrote:
Reading in the Embedded Objects help manual (Sec 7.2) that, "To be
able to
work on child documents without the need to open their master, specify in
the child document the master in the menu
Document->Settings->Document->Class. This master document will then be
used
in the background by LyX when you edit the child document.", I tried
to do
this. But, I cannot locate the parent document in the combo box and don't
know how to have LyX find the file in the "Local Layout" widget.
[snip]
The source directory had the parent and child *.lyx files. There's
also an
images/ subdirectory in which images for the child documents will be
placed.
When I open the "Local Layout" widget I see only the images subdirectory.
That button is for finding a *layout file* other than the ones that ship
with LyX. You need to click the button "Select default master document"
and then hit "Browse".
On another issue, I want to add the book's title and copyright in the
footer
of each chapter's title page so they can be separately distributed. Can I
remove the footnote indicator on the chapter title and the number in the
footer for this?
The best way to do this would be to define a new page style and then use
it. This is not something for which LyX has full native support. Have a
look at the documentation for the fancyhdr package. (There is some stuff
on that in LyX's own documentation.) Probably you will want to define a
'fancy' page style to be used most of the time. (E.g., with running
headers of chapter names on the left pages, and section names on the
right pages, with page numbers left or right depending, etc.) In
Document> Settings> Page Layout, you then choose "fancy" as the page style.
Then you can redefine the 'plain' style (as described in the fancyhdr
docs) to do something simpler, with the copyright info at the bottom.
(If you want that to change chapter to chapter, you can reissue the
commands to do that.) Then at the start of each chapter, you do:
\thispagestyle{plain}
in ERT. In some classes, that actually happens automatically: The
\chapter command issues that command itself. I'm not sure if your class
does.
As always with LaTeX, think: how can I automate this?
Riki
--
lyx-users mailing list
lyx-users@lists.lyx.org
http://lists.lyx.org/mailman/listinfo/lyx-users
Re: Bibliography
On 3/25/21 1:56 PM, Wolfgang Engelmann wrote: If I have two bib files in the bibliography; is the second one only used, if the citation is NOT in the first one? If you have duplicate citations in the two files, I believe that will cause a warning. I do not know which would be used. Is that the question? Riki -- lyx-users mailing list lyx-users@lists.lyx.org http://lists.lyx.org/mailman/listinfo/lyx-users
Re: Biblatex issues
On Thu, 25 Mar 2021, Paul A. Rubin wrote: Your MWE does not include a .bib file, so it's not possible to diagnose the exact problem. That said, your log's first encoding error looks as if pdflatex gagged on the dash(es) separating two page numbers in a reference. Paul, Yes, the van den Berg reference. I fixed that in the .bib file. I didn't see an issue on the other file, but replaced the hyphen anyway. I'm getting different errors in the whole file. Will explore that error log before asking for fresh eyeballs. Thanks and stay well, Rich -- lyx-users mailing list lyx-users@lists.lyx.org http://lists.lyx.org/mailman/listinfo/lyx-users
Re: Biblatex issues
On 3/25/21 4:40 PM, Rich Shepard wrote: It's been a long time since I last wrote a document with a bibliography. I have compilation issues on this one and cannot find a saved thread with the solution. I switched from bibtex to biblatex last year (or earlier) and want to use the author-date format for citations. Since I upgraded to TeXLive-2020 I may have lost changes that worked. A MWE is attached (without the entire JabRef bibliography) as well as the full error log. I don't understand why I'm getting errors when I try to compile the file with pdflatex, yet the PDF is produced. I'm confused. TIA, Rich Rich, Your MWE does not include a .bib file, so it's not possible to diagnose the exact problem. That said, your log's first encoding error looks as if pdflatex gagged on the dash(es) separating two page numbers in a reference. I suspect the offending characters are in the .bib file, and I would not be surprised if they come from a reference that was copied from a PDF file or some such and pasted into JabRef. The second encoding error seems to involve the same citations, and again seems to be in the vicinity of the page range, although the pathology appears slightly different. Paul -- lyx-users mailing list lyx-users@lists.lyx.org http://lists.lyx.org/mailman/listinfo/lyx-users
Biblatex issues
It's been a long time since I last wrote a document with a bibliography. I
have compilation issues on this one and cannot find a saved thread with the
solution.
I switched from bibtex to biblatex last year (or earlier) and want to use
the author-date format for citations. Since I upgraded to TeXLive-2020 I may
have lost changes that worked.
A MWE is attached (without the entire JabRef bibliography) as well as the
full error log. I don't understand why I'm getting errors when I try to
compile the file with pdflatex, yet the PDF is produced.
I'm confused.
TIA,
Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrbook
\begin_preamble
\date{}
\usepackage{textcomp,url,multicol,textgreek}
%\setkomafont{sectioning}{\rmfamily}
\end_preamble
\use_default_options false
\begin_modules
natbibapa
\end_modules
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "default" "default"
\font_typewriter "default" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command bibtex
\index_command default
\paperfontsize default
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry false
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine natbib
\cite_engine_type authoryear
\biblio_style humannat
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header
\begin_body
\begin_layout Chapter
Chapter name
\end_layout
\begin_layout Standard
Because each dioxin, furan, and biphenyl congener has a different toxicity
to organisms each congener's toxicity is related to what is accepted as
the most toxic congener: 2,3,7,8-tetrachlorodibenzo-
\emph on
p
\emph default
-dioxin (TCDD).
This is done using a toxicity equivalent weighting factor (TEF) determined
by a group of experts for each class of organism
\begin_inset CommandInset citation
LatexCommand citep
key "VandenBerg1998"
literal "true"
\end_inset
.
\end_layout
\begin_layout Standard
An example uses concentrations of trichloroethylene (TCE) in shallow ground
waters of Long Island, NY
\begin_inset CommandInset citation
LatexCommand citep
key "Eckhardt1989"
literal "true"
\end_inset
.
\end_layout
\begin_layout Standard
\begin_inset CommandInset bibtex
LatexCommand bibtex
btprint "btPrintCited"
bibfiles "/home/rshepard/documents/jabrefdb"
options "authordate4"
\end_inset
\end_layout
\end_body
\end_document
mwe.pdf
Description: Adobe PDF document
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020 on Slackware
(SlackBuilds.org)) (preloaded format=pdflatex 2021.2.17) 25 MAR 2021 13:29
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**mwe.tex
(./mwe.tex
LaTeX2e <2020-02-02> patch level 5
L3 programming layer <2020-06-03>
(/usr/share/texmf-dist/tex/latex/koma-script/scrbook.cls
Document Class: scrbook 2020/04/19 v3.30 KOMA-Script document class (book)
(/usr/share/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2020/04/19 v3.30 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2020/04/19 v3.30 KOMA-Script package (KOMA-Script-independent
basics and keyval usage)
(/usr/share/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
\KV@toks@=\toks15
) (/usr/share/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2020/04/19 v3.30 KOMA-Script package (loading files)
))) (/usr/share/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2020/04/19 v3.30 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip47
\scr@dte@tocline@numbox=\box45
)
Package tocbasic Info: babel extension for `toc' omitted
(tocbasic) because of missing \bbl@set@language on input line 137.
Class scrbook Info: File `scrsize11pt.clo' used instead of
(scrbook) file `scrsize11.clo' to setup font sizes
Parent-child book questions
I'm writing a book (KOMA-Script book class) which I expect to be long so I want to learn how to use the Parent-Child multi-source documents capabilities of LyX. In the parent doc I've set each child to have its own bibliography (references). I want a single index, but that's well in the future. Reading in the Embedded Objects help manual (Sec 7.2) that, "To be able to work on child documents without the need to open their master, specify in the child document the master in the menu Document->Settings->Document->Class. This master document will then be used in the background by LyX when you edit the child document.", I tried to do this. But, I cannot locate the parent document in the combo box and don't know how to have LyX find the file in the "Local Layout" widget. The source directory had the parent and child *.lyx files. There's also an images/ subdirectory in which images for the child documents will be placed. When I open the "Local Layout" widget I see only the images subdirectory. When I click on that directory's parent and select the parent file's directory the .lyx file is not displayed, only the images/ subdirectory. What have I missed? On another issue, I want to add the book's title and copyright in the footer of each chapter's title page so they can be separately distributed. Can I remove the footnote indicator on the chapter title and the number in the footer for this? I'm confident I'll have more questions as I learn this new way to create a book. Regards, Rich -- lyx-users mailing list lyx-users@lists.lyx.org http://lists.lyx.org/mailman/listinfo/lyx-users
Bibliography
If I have two bib files in the bibliography; is the second one only used, if the citation is NOT in the first one? Wolfgang -- lyx-users mailing list lyx-users@lists.lyx.org http://lists.lyx.org/mailman/listinfo/lyx-users
