Hi Andy,
Ahhh, no we don't have any really big drop down filters like yours...
Do you really need drop downs that big*, do you know if anyone's using them? (I
personally find overly large drop downs a bit cumbersome).
For the ESLIM and MP names/id's, you could take an approach similar to how
E
Just a small comment here: So far to be released 0.8 has managed to capture
the most of the existing Meditor XML structures through the backwards
compatibility
a
On 08/09/10 7:14 AM, "Richard Holland" wrote:
Word of warning - MartEditor will (highly likely) be replaced in BioMart 0.8,
Hi Hassan,
There has been a number of similar requests in the past. We are planning to
properly expose the update API in the 0.8.
a
On 08/09/10 6:51 AM, "a.has...@har.mrc.ac.uk" wrote:
Hi,
Everytime we have a new data from medical clinics, we do the following
steps from MartEditor GUI i
Hiya Darren
It's not really the data build that's the problem it's when we use the
actual data in the build to auto-populate a drop down in the filters
section of the biomart. When we build the next one the only way we've
found of resetting those filter dropdowns is to recreate them by hand
u
Hi,
Just out of interest - is your data changing that rapidly between releases that
you need to reconfigure/rebuild the MartEditor XMLs each build?
We automatically rebuild our biomarts nightly, all we do is just re-run the
SQL generated by MartBuilder (incorporating your new data) and
reconf
Word of warning - MartEditor will (highly likely) be replaced in BioMart 0.8,
with entirely new source code producing an entirely new mart XML format.
cheers,
Richard
On 8 Sep 2010, at 12:05, Joachim Baran wrote:
> Hi,
>
> On 8 September 2010 11:51, wrote:
>> File => Naive
>> File => impor
Hi,
On 8 September 2010 11:51, wrote:
> File => Naive
> File => import
> File => update all
> File => export
> Do you reckon that MartScript will help us?
'Naive' is not supported as such, but you could have a look at the
Java code and implement it yourself. It is fairly straightforward,
b
Hi,
Everytime we have a new data from medical clinics, we do the following
steps from MartEditor GUI in order to update biomart:
File => Naive
File => import
File => update all
File => export
Just because of this manual step, we cannot script/automate our whole data
upload process. It will
Hi!
You might be interested in MartScript,
http://github.com/joejimbo/MartScript, which can be used to
automatically create Ensembl (and related) marts.
I do not know your database structure, but perhaps it would work for
you with some minor modifications as well. The major downside of using
Hi,
I am working at Medical Research Council, Harwell, UK. We provide the
biomart interface to Europhenome database. We are trying to automate the
process of re-building biomart with new data. At the moment we need to run
marteditor manually and update the dataset in previously created mart. Is
t
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