Re: [Matplotlib-users] netcdf4-python build
After the build, I determined that 'install' was also needed. python setup.py install completed with no errors. OK, finally built and installed. But now my matplotlib script gives this error: Traceback (most recent call last): File map_PrcpBias_Northeast.py, line 21, in module from netCDF4 import Dataset as NetCDFFile ImportError: /usr/local/lib/python2.7/dist-packages/netCDF4.so: undefined symbol: nc_inq_var_endian So, checking shared library dependencies: ldd /usr/local/lib/python2.7/dist-packages/netCDF4.so linux-gate.so.1 = (0xb776a000) libnetcdf.so.7 = /usr/local/lib/libnetcdf.so.7 (0xb7604000) libpthread.so.0 = /lib/i386-linux-gnu/libpthread.so.0 (0xb75d3000) libc.so.6 = /lib/i386-linux-gnu/libc.so.6 (0xb742d000) libm.so.6 = /lib/i386-linux-gnu/libm.so.6 (0xb7401000) /lib/ld-linux.so.2 (0xb776b000) and ldd /usr/local/lib/libnetcdf.so.7 linux-gate.so.1 = (0xb7765000) libm.so.6 = /lib/i386-linux-gnu/libm.so.6 (0xb7663000) libc.so.6 = /lib/i386-linux-gnu/libc.so.6 (0xb74be000) /lib/ld-linux.so.2 (0xb7766000) no libhdf5 there. Can this be fixed? MR-- Got visibility? Most devs has no idea what their production app looks like. Find out how fast your code is with AppDynamics Lite. http://ad.doubleclick.net/clk;262219671;13503038;y? http://info.appdynamics.com/FreeJavaPerformanceDownload.html___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
On Friday, September 21, 2012, Michael Rawlins wrote: After the build, I determined that 'install' was also needed. python setup.py install completed with no errors. OK, finally built and installed. But now my matplotlib script gives this error: Traceback (most recent call last): File map_PrcpBias_Northeast.py, line 21, in module from netCDF4 import Dataset as NetCDFFile ImportError: /usr/local/lib/python2.7/dist-packages/netCDF4.so: undefined symbol: nc_inq_var_endian So, checking shared library dependencies: ldd /usr/local/lib/python2.7/dist-packages/netCDF4.so linux-gate.so.1 = (0xb776a000) libnetcdf.so.7 = /usr/local/lib/libnetcdf.so.7 (0xb7604000) libpthread.so.0 = /lib/i386-linux-gnu/libpthread.so.0 (0xb75d3000) libc.so.6 = /lib/i386-linux-gnu/libc.so.6 (0xb742d000) libm.so.6 = /lib/i386-linux-gnu/libm.so.6 (0xb7401000) /lib/ld-linux.so.2 (0xb776b000) and ldd /usr/local/lib/libnetcdf.so.7 linux-gate.so.1 = (0xb7765000) libm.so.6 = /lib/i386-linux-gnu/libm.so.6 (0xb7663000) libc.so.6 = /lib/i386-linux-gnu/libc.so.6 (0xb74be000) /lib/ld-linux.so.2 (0xb7766000) no libhdf5 there. Can this be fixed? MR From what I remember dealing with the netcdf c library, you have to explicitly set a compile flag to enable hdf5 support. That was a while ago, though. I'm not sure if things have changed. Hope this helps. -- Damon McDougall http://www.damon-is-a-geek.com B2.39 Mathematics Institute University of Warwick Coventry West Midlands CV4 7AL United Kingdom -- Got visibility? Most devs has no idea what their production app looks like. Find out how fast your code is with AppDynamics Lite. http://ad.doubleclick.net/clk;262219671;13503038;y? http://info.appdynamics.com/FreeJavaPerformanceDownload.html___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
From: Damon McDougall damon.mcdoug...@gmail.com To: Michael Rawlins rawlin...@yahoo.com Cc: matplotlib-users@lists.sourceforge.net matplotlib-users@lists.sourceforge.net Sent: Friday, September 21, 2012 2:50 PM Subject: Re: [Matplotlib-users] netcdf4-python build From what I remember dealing with the netcdf c library, you have to explicitly set a compile flag to enable hdf5 support. That was a while ago, though. I'm not sure if things have changed. Hope this helps. I did not do a source compile. I've reinstalled libhdf5-serial-1.8.4 package and now have the right HDF5 library files. Successfully built and installed netCDF4-1.0. My script loads in module but a read/write issue is present. This is code that worked on previous system. Error: File test.py, line 96, in module data.missing_value=-9.99 File netCDF4.pyx, line 2570, in netCDF4.Variable.__setattr__ (netCDF4.c:28242) File netCDF4.pyx, line 2392, in netCDF4.Variable.setncattr (netCDF4.c:26309) File netCDF4.pyx, line 1013, in netCDF4._set_att (netCDF4.c:12699) AttributeError: NetCDF: Write to read only The statement in the code triggers the error. data.missing_value=-9.99 . MR -- How fast is your code? 3 out of 4 devs don\\\'t know how their code performs in production. Find out how slow your code is with AppDynamics Lite. http://ad.doubleclick.net/clk;262219672;13503038;z? http://info.appdynamics.com/FreeJavaPerformanceDownload.html___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
[Matplotlib-users] netcdf4-python build
Ubuntu 12.04 hdf5-tools installed from package manager netcdf-bin and python-netcdf installed from package manager I downloaded netCDF4-1.0fix1.tar.gz from http://code.google.com/p/netcdf4-python/downloads/list python setup.py build /usr/bin/ld: cannot find -lhdf5_hl /usr/bin/ld: cannot find -lhdf5 collect2: ld returned 1 exit status /usr/bin/ld: cannot find -lhdf5_hl /usr/bin/ld: cannot find -lhdf5 collect2: ld returned 1 exit status error: Command gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-i686-2.7/netCDF4.o -L/usr/local/lib -L/usr/local/lib -Wl,-R/usr/local/lib -Wl,-R/usr/local/lib -lnetcdf -lhdf5_hl -lhdf5 -lz -o build/lib.linux-i686-2.7/netCDF4.so failed with exit status 1-- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
On 9/19/12 11:30 AM, Michael Rawlins wrote: Ubuntu 12.04 hdf5-tools installed from package manager netcdf-bin and python-netcdf installed from package manager I downloaded netCDF4-1.0fix1.tar.gz http://code.google.com/p/netcdf4-python/downloads/detail?name=netCDF4-1.0fix1.tar.gzcan=2q= from http://code.google.com/p/netcdf4-python/downloads/list python setup.py build /usr/bin/ld: cannot find -lhdf5_hl /usr/bin/ld: cannot find -lhdf5 collect2: ld returned 1 exit status /usr/bin/ld: cannot find -lhdf5_hl /usr/bin/ld: cannot find -lhdf5 collect2: ld returned 1 exit status error: Command gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-i686-2.7/netCDF4.o -L/usr/local/lib -L/usr/local/lib -Wl,-R/usr/local/lib -Wl,-R/usr/local/lib -lnetcdf -lhdf5_hl -lhdf5 -lz -o build/lib.linux-i686-2.7/netCDF4.so failed with exit status 1 Michael: You're missing the hdf5 library. You should be able to install that (along with the netcdf version 4 library) using the Ubuntu package manager. I don't know what the relevant package names are. See the docs at netcdf4-python.googlecode.com for installation instructions (including how to install the dependencies). You can also file a help request there and I'll see it (since this is not really a basemap issue). -Jeff -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX: (303)497-6449 NOAA/OAR/PSD R/PSD1Email : jeffrey.s.whita...@noaa.gov 325 BroadwayOffice : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web: http://tinyurl.com/5telg -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
From: Jeff Whitaker jeffrey.s.whita...@noaa.gov To: Michael Rawlins rawlin...@yahoo.com; Matplotlib Users matplotlib-users@lists.sourceforge.net Sent: Wednesday, September 19, 2012 2:35 PM Subject: Re: [Matplotlib-users] netcdf4-python build On 9/19/12 11:30 AM, Michael Rawlins wrote: Ubuntu 12.04 hdf5-tools installed from package manager netcdf-bin and python-netcdf installed from package manager I downloaded netCDF4-1.0fix1.tar.gz from http://code.google.com/p/netcdf4-python/downloads/list python setup.py build /usr/bin/ld: cannot find -lhdf5_hl /usr/bin/ld: cannot find -lhdf5 collect2: ld returned 1 exit status /usr/bin/ld: cannot find -lhdf5_hl /usr/bin/ld: cannot find -lhdf5 collect2: ld returned 1 exit status error: Command gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-i686-2.7/netCDF4.o -L/usr/local/lib -L/usr/local/lib -Wl,-R/usr/local/lib -Wl,-R/usr/local/lib -lnetcdf -lhdf5_hl -lhdf5 -lz -o build/lib.linux-i686-2.7/netCDF4.so failed with exit status 1 Michael: You're missing the hdf5 library. You should be able to install that (along with the netcdf version 4 library) using the Ubuntu package manager. I don't know what the relevant package names are. See the docs at netcdf4-python.googlecode.com for installation instructions (including how to install the dependencies). You can also file a help request there and I'll see it (since this is not really a basemap issue). -Jeff Just installed h5utils from package manager. Getting same errors. In package manager I'm searching on hdf5. If there's a package there I'm missing, then it certainly is not obvious. Mike -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX: (303)497-6449 NOAA/OAR/PSD R/PSD1Email : jeffrey.s.whita...@noaa.gov 325 Broadway Office : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web: http://tinyurl.com/5telg -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
On 19/09/2012 21:14, Michael Rawlins wrote: Just installed h5utils from package manager. Getting same errors. In package manager I'm searching on hdf5. If there's a package there I'm missing, then it certainly is not obvious. Try libhdf5-serial libhdf5-serial-dev Johann -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
From: Johann Rohwer j...@sun.ac.za To: matplotlib-users@lists.sourceforge.net Sent: Wednesday, September 19, 2012 3:22 PM Subject: Re: [Matplotlib-users] netcdf4-python build On 19/09/2012 21:14, Michael Rawlins wrote: Just installed h5utils from package manager. Getting same errors. In package manager I'm searching on hdf5. If there's a package there I'm missing, then it certainly is not obvious. Try libhdf5-serial libhdf5-serial-dev Johann After installing those two packages I was able build with setup.py in netCDF4-1.0/ Last few lines of the build: creating build/scripts.linux-i686-2.7 copying and adjusting utils/nc3tonc4 - build/scripts.linux-i686-2.7 copying and adjusting utils/nc4tonc3 - build/scripts.linux-i686-2.7 changing mode of build/scripts.linux-i686-2.7/nc3tonc4 from 644 to 755 changing mode of build/scripts.linux-i686-2.7/nc4tonc3 from 644 to 755 Here is my initialization: from mpl_toolkits.basemap import Basemap, shiftgrid, cm from netCDF4 import Dataset as NetCDFFile Here is result of execution of script: Traceback (most recent call last): File map_PrcpBias_Northeast.py, line 21, in module from netCDF4 import Dataset as NetCDFFile I understand using the python-netcdf package is an option. Installed that but am getting an eror saying missing libhdf5_hl.so.6 when trying: from Scientific.IO.NetCDF import NetCDFFile MR -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users-- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
From: Jeff Whitaker jeffrey.s.whita...@noaa.gov To: Michael Rawlins rawlin...@yahoo.com Sent: Wednesday, September 19, 2012 4:57 PM Subject: Re: [Matplotlib-users] netcdf4-python build On 9/19/12 2:43 PM, Michael Rawlins wrote: From: Johann Rohwer j...@sun.ac.za To: matplotlib-users@lists.sourceforge.net Sent: Wednesday, September 19, 2012 3:22 PM Subject: Re: [Matplotlib-users] netcdf4-python build On 19/09/2012 21:14, Michael Rawlins wrote: Just installed h5utils from package manager. Getting same errors. In package manager I'm searching on hdf5. If there's a package there I'm missing, then it certainly is not obvious. Try libhdf5-serial libhdf5-serial-dev Johann After installing those two packages I was able build with setup.py in netCDF4-1.0/ Last few lines of the build: creating build/scripts.linux-i686-2.7 copying and adjusting utils/nc3tonc4 - build/scripts.linux-i686-2.7 copying and adjusting utils/nc4tonc3 - build/scripts.linux-i686-2.7 changing mode of build/scripts.linux-i686-2.7/nc3tonc4 from 644 to 755 changing mode of build/scripts.linux-i686-2.7/nc4tonc3 from 644 to 755 Here is my initialization: from mpl_toolkits.basemap import Basemap, shiftgrid, cm from netCDF4 import Dataset as NetCDFFile Here is result of execution of script: Traceback (most recent call last): File map_PrcpBias_Northeast.py, line 21, in module from netCDF4 import Dataset as NetCDFFile Michael: Please include the full traceback - what you posted doesn't really tell us anything. How is full traceback obtained? I understand using the python-netcdf package is an option. Installed that but am getting an eror saying missing libhdf5_hl.so.6 when trying: Do you have libhdf5_hl.so anywhere on your system after installing the libhdf5-serial package? According to this http://packages.ubuntu.com/lucid/i386/libhdf5-serial-1.8.4/filelist it should be installed in /usr/lib. Yes it is in /usr/lib. Also, if I read this http://packages.ubuntu.com/natty/libnetcdf6 correctly, just installing the libnetcdf6 and libnetcdf-dev packages should be all you need to do - they depend on libhdf5-serial. -Jeff Both packages are installed. MR from Scientific.IO.NetCDF import NetCDFFile MR -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX: (303)497-6449 NOAA/OAR/PSD R/PSD1Email : jeffrey.s.whita...@noaa.gov 325 Broadway Office : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web: http://tinyurl.com/5telg -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] netcdf4-python build
On 9/19/12 3:29 PM, Michael Rawlins wrote: *From:* Jeff Whitaker jeffrey.s.whita...@noaa.gov *To:* Michael Rawlins rawlin...@yahoo.com *Sent:* Wednesday, September 19, 2012 4:57 PM *Subject:* Re: [Matplotlib-users] netcdf4-python build On 9/19/12 2:43 PM, Michael Rawlins wrote: *From:* Johann Rohwer j...@sun.ac.za mailto:j...@sun.ac.za *To:* matplotlib-users@lists.sourceforge.net mailto:matplotlib-users@lists.sourceforge.net *Sent:* Wednesday, September 19, 2012 3:22 PM *Subject:* Re: [Matplotlib-users] netcdf4-python build On 19/09/2012 21:14, Michael Rawlins wrote: Just installed h5utils from package manager. Getting same errors. In package manager I'm searching on hdf5. If there's a package there I'm missing, then it certainly is not obvious. Try libhdf5-serial libhdf5-serial-dev Johann After installing those two packages I was able build with setup.py http://setup.py/ in netCDF4-1.0/ Last few lines of the build: creating build/scripts.linux-i686-2.7 copying and adjusting utils/nc3tonc4 - build/scripts.linux-i686-2.7 copying and adjusting utils/nc4tonc3 - build/scripts.linux-i686-2.7 changing mode of build/scripts.linux-i686-2.7/nc3tonc4 from 644 to 755 changing mode of build/scripts.linux-i686-2.7/nc4tonc3 from 644 to 755 Here is my initialization: from mpl_toolkits.basemap import Basemap, shiftgrid, cm from netCDF4 import Dataset as NetCDFFile Here is result of execution of script: Traceback (most recent call last): File map_PrcpBias_Northeast.py http://map_prcpbias_northeast.py/, line 21, in module from netCDF4 import Dataset as NetCDFFile Michael: Please include the full traceback - what you posted doesn't really tell us anything. How is full traceback obtained? Michael: I just meant for you to paste the full output, not just the first three lines. Since you apparently have all the libs installed, I don't understand what's going on. Please try deleting the netcdf4-python build directory, and then run 'python setup.py build' again, capturing the output in a file. Send me that file off-list and I'll see if I can suggest something. -Jeff I understand using the python-netcdf package is an option. Installed that but am getting an eror saying missing libhdf5_hl.so.6 when trying: Do you have libhdf5_hl.so anywhere on your system after installing the libhdf5-serial package? According to this http://packages.ubuntu.com/lucid/i386/libhdf5-serial-1.8.4/filelist it should be installed in /usr/lib. Yes it is in /usr/lib. Also, if I read this http://packages.ubuntu.com/natty/libnetcdf6 correctly, just installing the libnetcdf6 and libnetcdf-dev packages should be all you need to do - they depend on libhdf5-serial. -Jeff Both packages are installed. MR from Scientific.IO http://scientific.io.net/.NetCDF import NetCDFFile MR -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net mailto:Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats.http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net mailto:Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX: (303)497-6449 NOAA/OAR/PSD R/PSD1Email :jeffrey.s.whita...@noaa.gov mailto:jeffrey.s.whita...@noaa.gov 325 BroadwayOffice : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web: http://tinyurl.com/5telg
Re: [Matplotlib-users] netcdf4-python build
From: Jeff Whitaker jeffrey.s.whita...@noaa.gov To: Michael Rawlins rawlin...@yahoo.com Cc: matplotlib-users@lists.sourceforge.net matplotlib-users@lists.sourceforge.net Sent: Wednesday, September 19, 2012 5:57 PM Subject: Re: [Matplotlib-users] netcdf4-python build On 9/19/12 3:29 PM, Michael Rawlins wrote: How is full traceback obtained? Michael: I just meant for you to paste the full output, not just the first three lines. That's all that appears at standard output and I do not know how to generate/find anything else. Since you apparently have all the libs installed, I don't understand what's going on. Please try deleting the netcdf4-python build directory, and then run 'python setup.py build' again, capturing the output in a file. Send me that file off-list and I'll see if I can suggest something. -Jeff Out of build, after removing build/ directory: HDF5_DIR environment variable not set, checking some standard locations .. checking /home/rawlins ... checking /usr/local ... HDF5 found in /usr/local NETCDF4_DIR environment variable not set, checking standard locations.. checking /home/rawlins ... checking /usr/local ... netCDF4 found in /usr/local running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler opti ons running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler opt ions running build_src build_src building py_modules sources building extension netCDF4 sources build_src: building npy-pkg config files running build_py creating build creating build/lib.linux-i686-2.7 copying netcdftime.py - build/lib.linux-i686-2.7 copying netCDF4_utils.py - build/lib.linux-i686-2.7 copying ordereddict.py - build/lib.linux-i686-2.7 running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'netCDF4' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wst rict-prototypes -fPIC creating build/temp.linux-i686-2.7 compile options: '-I/usr/local/include -I/usr/local/include -I/usr/lib/python2.7 /dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: netCDF4.c netCDF4.c: In function '__pyx_f_7netCDF4__find_cmptype': netCDF4.c:46724:13: warning: '__pyx_v_xtype' may be used uninitialized in this f unction [-Wuninitialized] netCDF4.c:37881:11: note: '__pyx_v_xtype' was declared here gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions - Wl,-z,relro build/temp.linux-i686-2.7/netCDF4.o -L/usr/local/lib -L/usr/local/li b -Wl,-R/usr/local/lib -Wl,-R/usr/local/lib -lnetcdf -lhdf5_hl -lhdf5 -lz -o bui ld/lib.linux-i686-2.7/netCDF4.so running scons running build_scripts creating build/scripts.linux-i686-2.7 copying and adjusting utils/nc3tonc4 - build/scripts.linux-i686-2.7 copying and adjusting utils/nc4tonc3 - build/scripts.linux-i686-2.7 changing mode of build/scripts.linux-i686-2.7/nc3tonc4 from 644 to 755 changing mode of build/scripts.linux-i686-2.7/nc4tonc3 from 644 to 755 -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
