Re: [Mauve-users] SNP extraction

2016-12-13 Thread Aleksander Mahnič
em on all available cores and then just stopped after a few minutes with the output remaining empty. Thank you for your help. Best, Aleksander - Izvirno sporočilo - Od: "aaron darling" Za: "mauve-users" Poslano: Torek, 13. December 2016 16:05:28 Zadeva: Re: [Ma

Re: [Mauve-users] SNP extraction

2016-12-13 Thread Aaron Darling
Hi Aleksander, No the guide tree is not used in the SNP extraction. Did your progressiveMauve run generate the .backbone and .bbcols files? Are you generating the SNP file from the command line or within the viewer? Are there any messages in either the terminal or the console log window? Best, -Aar

[Mauve-users] SNP extraction

2016-12-13 Thread Aleksander Mahnič
Hi all, I have some problems with SNP extraction from alignment of 48 genomes (the output file remains empty). I noticed, that we did not set the progressiveMauve to save the guide tree. Could this play a role in SNP extract failing? If so.. Is there a fast option to make a guide tree from t