[MORPHMET] Warped Grids in MorphoJ

2015-02-12 Thread Michael Holmes
Hi All, I am running MorphoJ on Mac OSX. I am looking at morhological variation between two datasets. In each dataset, each specimen has four replicates. I combined the datasets, made classifier files and ran the Procrustes fit and generated the covariance matrix. How then do I make a vector

Re: [MORPHMET] Warped Grids in MorphoJ

2015-02-12 Thread Emma Sherratt
Dear Mike, One way you can do this is by using the canonical variates analysis function. Between two groups you will get the shape change graph associate with the difference between groups. Or you can go to Preliminaries average observations by... and choose the groups classifier, and then right

Re: [MORPHMET] Warped Grids in MorphoJ

2015-02-12 Thread Emma Sherratt
Oh sorry, I think the latter way just shows the group mean from the overall mean - so you may need to do some cutting and pasting... Contact Chris Klingenberg, he might have an easier way up his sleeve. Emma ~~~ Emma Sherratt, PhD. Lecturer in

Re: [MORPHMET] 3D images - manipulation and registration?

2015-02-12 Thread Hildur Magnúsdóttir
Hi Stefan, Thank you very much for the tip. The *pcAlign* function worked like a charm! Regards, Hildur On Thursday, February 5, 2015 at 3:45:56 PM UTC, Stefan Schlager wrote: Hi Hildur, you can try to use the function pcAlign (from my R-package Morpho), to align meshes by their