Re: [MORPHMET] help with "classify" in RRPP

2019-05-07 Thread Mike Collyer
Nicole, I assume that your intention is to summarize a species probability from the several probabilities of specimens, if data sets are combined? (I think you might have used “species” twice but meant “specimen" once, below). If so, there are two ways you could do this. One would be as you

Re: [MORPHMET] How to fix erroneous 3D coordinates took by microscribe

2019-05-07 Thread morphmet
It depends on what is wrong with the data (I haven't checked it). Morpheus et al. can be used to correct data after visual inspection or mark bad data points as missing or delete whole sets of coordinates for particular points. The easiest way to do this is to get the data into a form

[MORPHMET] help with "classify" in RRPP

2019-05-07 Thread Nicole Ibagón
Dear all I'm working with five different datasets (lateral and dorsal view of the skull and jaw) of a neotropical bat genus. My research question is if one species (described with a single sample), is a synonym of one of the other species of the genus. I used classify function of RRPP for this

RE: [MORPHMET] How to fix erroneous 3D coordinates took by microscribe

2019-05-07 Thread Adams, Dean [EEOBS]
To add briefly to Dennis' comment. If landmark estimation is the route taken, both TPS-based and regression-based imputation are implemented in geomorph. Dean Dr. Dean C. Adams Director of Graduate Education, EEB Program Professor Department of Ecology, Evolution, and Organismal Biology Iowa

[MORPHMET] How to fix erroneous 3D coordinates took by microscribe

2019-05-07 Thread Azadeh Mohaseb
Dear all I am a post-doc researcher on GMM and I work on equids bones. Recently, I digitized some modern equid bones by a microscribe and then I realized that the 3d coordinates of some of these individuals are not correcte. As I don't have access to these bones to digitize them again, I