Re: [Mzmine-devel] Baseline correction configuration

2012-05-03 Thread Pudney Chris (ext) GBJH
G'day, I think you probably have an R configuration issue. Could you please share your .BAT file please. Also add the following lines to your .BAT file directly after the line that sets JRI_LIB_PATH: rem Some debug. set dir "%R_HOME%" dir "%R_HOME%\bin\x64" dir "%JRI_LIB_PATH%" This will pro

Re: [Mzmine-devel] Help Launching MZMine 2

2012-05-03 Thread Pudney Chris (ext) GBJH
G'day, > First, it was saying JAVA_COMMAND=Java is an invalid command. > I changed this to direct to the java executable: > *set JAVA_COMMAND=C:\Program Files (x86)\Java\jre1.6.0\bin\java * > Now I get an error that says: *'C:\Program' is not recognized as an internal or external command. *

[Mzmine-devel] my inquiry!

2012-05-03 Thread Jiangtao Gao
Hi, I am one postdoc associate in UIUC and recently I labelled my sample where I want to find all pairs of peaks with 3.0188 Da of mass difference. My friend recommended to use MZmine software to figure out this problem. I try to use "peak complex search", but I failed because of "at least 1 peak