Re: [Open Babel] Gen3D troubles

2012-11-18 Thread Geoff Hutchison
> I have some troubles with the --gen3D option. On some files, i have this > warning : WARNING: damped steplength > and i can't do anything else after. There shouldn't be any concern about this. Basically, it's suggesting that the initial geometry is a bit crude. Often the resulting 3D geometry i

[Open Babel] Gen3D troubles

2012-11-18 Thread Altyr
Hi all ! I have some troubles with the --gen3D option. On some files, i have this warning : WARNING: damped steplength and i can't do anything else after. For ex: this is my line command :("obabel -ismi file.smi -osdf --gen3D") I work on Ubuntu, i compiled openbabel (for the last version) by myse