Re: [Open Babel] Converting pdbqt to sdf

2021-03-11 Thread Maciek Wójcikowski
Hi Eduardo, As I understand - you are trying to read back Vina docked conformers of your small molecules. Maybe I can suggest a different approach, which I implemented in ODDT. Instead of reading back the molecules and recreating bonds, you could read back just the 3D conformer onto an original mo

[Open Babel] Converting pdbqt to sdf

2021-03-11 Thread Eduardo Mayo
Hi OpenBabels users, Nice to join the community. I would like to convert pdbqt file to sdf file without using openbabel itself. I mean why should my project has another dependency just to do a single task. So I look into OpenBabel code and I finally found this ( https://github.com/openbabel/openbab